PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_9472_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Dof

Protein Properties

Length: 491aa MW: 53687.4 Da PI: 6.5741

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_9472_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.1	2.3e-39	124	184	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvP+G+grrknk++s cra_locus_9472_iso_3_len_1846_ver_3 124 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGSGRRKNKNTS 184 7899******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-30	117	181	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.1E-32	126	182	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.854	128	182	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	130	166	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence Send to blast
MSELKDPAIK LFGKTISLPQ NEADSNPIID DVDHRDHQTT TTAAAACQEN KNTEEELTGN 60 KQEDDLPTDL AAEESIDPAT LSDTSDDNKT SGGAKNETES PDDAKKEDLD DDNDLSQEKT 120 LKKPDKILPC PRCNSMDTKF CYYNNYNVNQ PRHFCKNCQR YWTAGGTMRN VPIGSGRRKN 180 KNTSTANYRH IMISDAARVD VANGIHIPTL KANGAILTFG SERPLCESMA AALNLAERSY 240 NHHHVPNGFH GNEQRLAAIP SRGKEVVKDN SNGTSSITTS SLEMGGSAAE SVVKNNQGYL 300 PHAPPFPGPS WPYPWNPHQW RAAPIPAPAF NPSGFPISFY PAPPYWGCAA PAGPWNMSWL 360 PPAPSSSDNS ALSTSPTSPT LGKHSRDGNI LSPKNQAKEE ESPQEKNKER RGGILIPKTL 420 RIDDPNEAAK SSIWSTLGIK NDKLANPVSQ KSLFKAFPSK ADERNHISDT SLLLQANPAA 480 YSRSRSFQES M

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence Send to blast

MSELKDPAIK LFGKTISLPQ NEADSNPIID DVDHRDHQTT TTAAAACQEN KNTEEELTGN  60
KQEDDLPTDL AAEESIDPAT LSDTSDDNKT SGGAKNETES PDDAKKEDLD DDNDLSQEKT  120
LKKPDKILPC PRCNSMDTKF CYYNNYNVNQ PRHFCKNCQR YWTAGGTMRN VPIGSGRRKN  180
KNTSTANYRH IMISDAARVD VANGIHIPTL KANGAILTFG SERPLCESMA AALNLAERSY  240
NHHHVPNGFH GNEQRLAAIP SRGKEVVKDN SNGTSSITTS SLEMGGSAAE SVVKNNQGYL  300
PHAPPFPGPS WPYPWNPHQW RAAPIPAPAF NPSGFPISFY PAPPYWGCAA PAGPWNMSWL  360
PPAPSSSDNS ALSTSPTSPT LGKHSRDGNI LSPKNQAKEE ESPQEKNKER RGGILIPKTL  420
RIDDPNEAAK SSIWSTLGIK NDKLANPVSQ KSLFKAFPSK ADERNHISDT SLLLQANPAA  480
YSRSRSFQES M

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027150904.1	0.0	cyclic dof factor 1-like
TrEMBL	A0A068TWC9	0.0	A0A068TWC9_COFCA; Uncharacterized protein
STRING	VIT_14s0108g00980.t01	1e-164	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122