PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_9524_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NAC

Protein Properties

Length: 347aa MW: 39522.2 Da PI: 6.9173

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_9524_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161.3	3.6e-50	20	147	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrk 74 lp+GfrFhP+deel+v+yL kk+++ +l++ ++++ev++yk++PwdLpkk++ +++ewyfF++rd+ky++g r+ cra_locus_9524_iso_1_len_1146_ver_3 20 LPAGFRFHPSDEELIVHYLGKKANKFPLPA-SIVAEVELYKFNPWDLPKKCSFGDEEWYFFTPRDRKYPNGMRP 92 799*************************.88***********99999***************** PP NAM 75 nratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 nr++ sgyWkatg dk+++++ +++++g+kk Lvfy+g+ pkg+ktdW+mheyrl cra_locus_9524_iso_1_len_1146_ver_3 93 NRMAGSGYWKATGIDKPIVAScGSKVIGVKKALVFYTGKPPKGNKTDWTMHEYRL 147 ***************9988899*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-59	17	182	IPR003441	NAC domain
PROSITE profile	PS51005	57.604	20	182	IPR003441	NAC domain
Pfam	PF02365	1.1E-24	21	147	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
XGRGMNSMEK NPKSEIIFQL PAGFRFHPSD EELIVHYLGK KANKFPLPAS IVAEVELYKF 60 NPWDLPKKCS FGDEEWYFFT PRDRKYPNGM RPNRMAGSGY WKATGIDKPI VASCGSKVIG 120 VKKALVFYTG KPPKGNKTDW TMHEYRLPEP AAPAADSSWT TSTTKQNSMR LDEWVLCRVR 180 QKTGMNFGNF GEERNGLNNN NNNNKTVQKP QKTANYSTFE IVKDYDDLYY KEYGPMLPFL 240 FNDNSSSQDL ASTDQTTISF EGKNVKDSSS SSVCEDNFNI GIGIVNGKRK MFEDQDNIIS 300 HKKLAYQKEM ENDDDELLPI TPSSNNNNID QLCSSMMYQE LYTLAFT

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

XGRGMNSMEK NPKSEIIFQL PAGFRFHPSD EELIVHYLGK KANKFPLPAS IVAEVELYKF  60
NPWDLPKKCS FGDEEWYFFT PRDRKYPNGM RPNRMAGSGY WKATGIDKPI VASCGSKVIG  120
VKKALVFYTG KPPKGNKTDW TMHEYRLPEP AAPAADSSWT TSTTKQNSMR LDEWVLCRVR  180
QKTGMNFGNF GEERNGLNNN NNNNKTVQKP QKTANYSTFE IVKDYDDLYY KEYGPMLPFL  240
FNDNSSSQDL ASTDQTTISF EGKNVKDSSS SSVCEDNFNI GIGIVNGKRK MFEDQDNIIS  300
HKKLAYQKEM ENDDDELLPI TPSSNNNNID QLCSSMMYQE LYTLAFT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-65	7	182	2	168	Stress-induced transcription factor NAC1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027070342.1	1e-111	NAC domain-containing protein 2-like
Refseq	XP_027175978.1	1e-111	NAC domain-containing protein 2-like
TrEMBL	A0A068UGJ2	1e-108	A0A068UGJ2_COFCA; Uncharacterized protein
STRING	VIT_08s0040g02110.t01	3e-91	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13390	11	17