PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_9526_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bHLH
Protein Properties Length: 247aa    MW: 26396.2 Da    PI: 6.3869
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_9526_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.54.2e-073312255
                                         HHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                  HLH 22 eLrellPkaskapskKlsKaeiLekAveYIksLq 55
                                          L+el+P++      K +Ka++L +A+eY+k Lq
  cra_locus_9526_iso_2_len_1184_ver_3  3 ALQELIPNC-----NKADKASMLDEAIEYLKTLQ 31
                                         69******8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.846130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-10139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-10255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.92E-7335No hitNo description
PfamPF000102.1E-4331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MRALQELIPN CNKADKASML DEAIEYLKTL QLQVQIMSMG AGLCMPPMMF PTGLQHMHGA  60
HMPHFAPMSS GMGMGFGMGM LDMNSGSPRY PIFPVPPMQG SQFPSPISGS SNFQGMAGSN  120
LPVFGHPSQG FPMSVPRTPL VPLMRQAPLS STLNLNASRM GTHAEPLRRT SPVFIHDIRP  180
QDKNSNIGQN AIASNSLSQT SAELPTTKDV DVPPASLSKD VTVQDACGNA TANLTNTDDV  240
SREEGSD
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269|PubMed:17485859}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269|PubMed:17485859}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027163130.12e-92transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like isoform X3
SwissprotQ0JNI93e-33PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15
TrEMBLA0A0P0BZY01e-177A0A0P0BZY0_CATRO; Phytochrome interacting factor 3
STRINGPGSC0003DMT4000470795e-64(Solanum tuberosum)
Publications ? help Back to Top
  1. Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
    Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.
    Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91
    [PMID:17485859]
  2. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]