PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_96029_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GATA
Protein Properties Length: 112aa    MW: 12470.4 Da    PI: 11.3264
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_96029_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA529.8e-171246135
                                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                                         C  C+tt TplWR gp g+k+LCnaCG++y kk++
  cra_locus_96029_iso_1_len_334_ver_3 12 CDGCHTTRTPLWRGGPGGPKSLCNACGIKYNKKRR 46
                                         889*****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.728641IPR000679Zinc finger, GATA-type
SMARTSM004011.3E-9664IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.14E-11947No hitNo description
CDDcd002022.74E-101169No hitNo description
Gene3DG3DSA:3.30.50.102.8E-141146IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.5E-141246IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
XKNSSRCTLK SCDGCHTTRT PLWRGGPGGP KSLCNACGIK YNKKRRQLLV LDTGRSNAKK  60
KRSGSMNRSS EEAREILKLR FIALGSKMVL QRSGNLMSKL REEERAALLL MA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14361KRRQLLVLDTGRSNAKKKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00335DAPTransfer from AT3G06740Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079598.17e-53GATA transcription factor 15
SwissprotQ8LG102e-24GAT15_ARATH; GATA transcription factor 15
TrEMBLA0A2G9G6U21e-53A0A2G9G6U2_9LAMI; Uncharacterized protein
STRINGMigut.D00108.1.p2e-49(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85032229
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  3. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]