PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_9629_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MIKC_MADS
Protein Properties Length: 215aa    MW: 24893.4 Da    PI: 8.1009
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_9629_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.98.4e-311059251
                                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                         rien++ rqvtfskRrng+lKKA+ELSvLCda+va+iifs++gklye+ss
  cra_locus_9629_iso_1_len_1032_ver_3 10 RIENETSRQVTFSKRRNGLLKKAYELSVLCDAQVALIIFSQKGKLYEFSS 59
                                         8***********************************************96 PP
2K-box72.51.2e-2480171898
                                K-box   8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieel 80 
                                          s + e++ ++l+ e+a++ k+ie+L+ +qR+l+G++L s+slkeL+ + +qLe+s+  iRs+K ++++e+ie+l
  cra_locus_9629_iso_1_len_1032_ver_3  80 SqKVENQIQHLKYESANMAKKIEQLEASQRKLMGQNLASCSLKELEDIDDQLERSIGIIRSRKVQIYKEEIERL 153
                                          2367888******************************************************************* PP

                                K-box  81 qkkekelqeenkaLrkkl 98 
                                          + ke  l een +L +k 
  cra_locus_9629_iso_1_len_1032_ver_3 154 KAKEILLLEENARLCHKC 171
                                          **************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.66161IPR002100Transcription factor, MADS-box
SMARTSM004325.1E-42160IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.8E-34381IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
CDDcd002651.66E-42378No hitNo description
PRINTSPR004041.3E-31323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-313859IPR002100Transcription factor, MADS-box
PfamPF014866.5E-2484172IPR002487Transcription factor, K-box
PROSITE profilePS5129714.6587177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009838Biological Processabscission
GO:0009909Biological Processregulation of flower development
GO:0010150Biological Processleaf senescence
GO:0080187Biological Processfloral organ senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MVRGKIQMRR IENETSRQVT FSKRRNGLLK KAYELSVLCD AQVALIIFSQ KGKLYEFSSS  60
NMQRTIERYR ECAKEQQIDS QKVENQIQHL KYESANMAKK IEQLEASQRK LMGQNLASCS  120
LKELEDIDDQ LERSIGIIRS RKVQIYKEEI ERLKAKEILL LEENARLCHK CELKEPENPP  180
TSKVMNETAT CSQSTTDQSS EVETELYIGL PESRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-21171171MEF2C
5f28_B2e-21171171MEF2C
5f28_C2e-21171171MEF2C
5f28_D2e-21171171MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00576DAPTransfer from AT5G62165Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027103881.14e-99MADS-box protein AGL42-like
SwissprotQ9FIS17e-78AGL42_ARATH; MADS-box protein AGL42
TrEMBLA0A068UCB29e-98A0A068UCB2_COFCA; Uncharacterized protein
STRINGXP_002510866.11e-84(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625