PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_9707_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GATA
Protein Properties Length: 262aa    MW: 29176.9 Da    PI: 9.1324
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_9707_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.31e-18188222135
                                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                          Cs+C++ kTp+WR gp g+ktLCnaCG++y++ +l
  cra_locus_9707_iso_1_len_1076_ver_3 188 CSHCQAQKTPQWRGGPLGPKTLCNACGVRYKSGRL 222
                                          *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004017.8E-15182232IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.031182218IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.98E-16183246No hitNo description
Gene3DG3DSA:3.30.50.101.4E-14186220IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.32E-13187238No hitNo description
PfamPF003202.3E-16188222IPR000679Zinc finger, GATA-type
PROSITE patternPS003440188213IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MECFKNHLPV SENLHSNSSQ LKELPEVASK NGSLDDLFAS HGSEEGDMAL EWLSTFVEDC  60
FTSTGNCLPP PPPPPKLHPL KNVDTFLNPK PAEKIQKTSS FPLERIVIPG KARSKRKRGS  120
SILKTRSQFS SFCWSNNQDD PPTLLQQAYW LAESELIKPE KDEKQEQTAV DGGGGGNGQQ  180
QQQQSRRCSH CQAQKTPQWR GGPLGPKTLC NACGVRYKSG RLLPEYRPAK SPTFLTFKHS  240
NSHKKVMEMR MALSHSHPPS NS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021663753.16e-78GATA transcription factor 5-like
TrEMBLA0A438JKX72e-73A0A438JKX7_VITVI; GATA transcription factor 9
TrEMBLF6HLA62e-73F6HLA6_VITVI; Uncharacterized protein
STRINGVIT_08s0007g07550.t013e-74(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1515558