PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_9739_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C2H2

Protein Properties

Length: 209aa MW: 22257.9 Da PI: 10.1684

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_9739_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.5	2.4e-05	178	200	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++C++ F+ ++ L++H + H cra_locus_9739_iso_2_len_768_ver_3 178 SCHKCNEQFTKWEALETHHLSrH 200 7*****************99878 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	179	200	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MPAVWFALKK SLHCKSEPAE VHDPKANGNL SSILTKKTGR SGCSRSIANL RDVIHGSKRH 60 IEKPTICSPR SIGSSELLNP ITHEVVLSNS TCELKISGYG FQDNNVSGGP GGAGVSSFVG 120 TLKPGTPGPG GHHYKPKGLG SPMRRTGTSL SKRRGSGFGT ISSKPSFGVD SHGFTTLSCH 180 KCNEQFTKWE ALETHHLSRH AVTELLEGX

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027161740.1	3e-99	uncharacterized protein LOC113762475
TrEMBL	A0A068VJQ8	5e-96	A0A068VJQ8_COFCA; Uncharacterized protein
STRING	XP_009588899.1	3e-92	(Nicotiana tomentosiformis)