PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_9764_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Protein Properties

Length: 198aa MW: 21727.9 Da PI: 8.2814

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_9764_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	49.5	7.4e-16	45	135	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 f+k +++s+v+k +l lp kf++ h ++ +k++tledesg ++e ++ +++g+ l++GW +F+ a++L cra_locus_9764_iso_2_len_684_ver_3 45 FIKLMLRSHVTKGFWLGLPAKFCKMHlP--SNDEKKVTLEDESGAEYETNF--LGYKGG--LGGGWAGFAMAHNL 113 89*******************99953..446679***********..999988..9********* PP -TT-EEEEEE-SSSEE..EEEEE- CS B3 75 kegDfvvFkldgrsefelvvkvfr 98 egD + l++ +f +v ++r cra_locus_9764_iso_2_len_684_ver_3 114 LEGDAAGLPLVRPCKF--KVYIVR 135 **998888876777..666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.4E-15	38	136	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.06E-19	39	136	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.53E-16	43	135	No hit	No description
SMART	SM01019	4.0E-18	45	137	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.0E-13	45	135	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.053	45	137	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MGCTQCECSP DSLNVINVRK SVEDCPVVAR TKEVQANLDA QFPSFIKLML RSHVTKGFWL 60 GLPAKFCKMH LPSNDEKKVT LEDESGAEYE TNFLGYKGGL GGGWAGFAMA HNLLEGDAAG 120 LPLVRPCKFK VYIVRSASSG KVDGAVGLLT LENHTSGRAF GSFIDFQNFD IIVNGFNLGS 180 RLSEPNRIKY YKLCHSQK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027112474.1	1e-52	B3 domain-containing protein Os01g0234100-like isoform X3
Swissprot	Q10QS9	1e-37	Y3845_ORYSJ; B3 domain-containing protein Os03g0184500
TrEMBL	V4S779	2e-50	V4S779_9ROSI; Uncharacterized protein (Fragment)
STRING	XP_006423042.1	4e-51	(Citrus clementina)

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]