PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_9769_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C3H

Protein Properties

Length: 722aa MW: 79968.1 Da PI: 6.0892

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_9769_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.3	4.8e-07	123	147	5	26
--SGGGGTS...--TTTTT-SS-SS CS zf-CCCH 5 lCrffartG...tCkyGdrCkFaHg 26 lC+ a++G C yGd+C+F+H+ cra_locus_9769_iso_2_len_2620_ver_3 123 LCPEVAKSGkvsSCAYGDKCRFSHD 147 7999********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	7.9E-4	123	149	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.5E-4	123	147	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.516	123	149	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	7.526	162	188	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:3.20.20.70	1.1E-74	366	609	IPR013785	Aldolase-type TIM barrel
CDD	cd02801	2.33E-94	370	605	No hit	No description
SuperFamily	SSF51395	3.3E-65	370	683	No hit	No description
Pfam	PF01207	2.6E-53	373	640	IPR001269	tRNA-dihydrouridine synthase
PROSITE pattern	PS01136	0	454	472	IPR018517	tRNA-dihydrouridine synthase, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008033	Biological Process	tRNA processing
GO:0055114	Biological Process	oxidation-reduction process
GO:0017150	Molecular Function	tRNA dihydrouridine synthase activity
GO:0046872	Molecular Function	metal ion binding
GO:0050660	Molecular Function	flavin adenine dinucleotide binding

Sequence ? help Back to Top
Protein Sequence Length: 722 aa Download sequence Send to blast
XTETLTGQRG LNRPKMDGVS AQPAVIADDS RISEDTRNSE LDVDGSAAAP VPAQVTPEEL 60 VAKAIAPVKR EFLRPPPVRA SSATNTQNDD VAEAKSASLV KEKKSKRQLK RERRQDLKSA 120 LHLCPEVAKS GKVSSCAYGD KCRFSHDIEA FKAQKPVDLE GKCPFLEVNE GPCPYGLACR 180 FAGTHKNDDD AAVSGGTVRI RRNSSEVNSL NKDVQKLLWK NKMKFTKAEK TLKLLGLVGK 240 MKNFEDKDND DQPVANGSDV DRDNGNAEAI VVGSSNEVEC CSQELADDKP DDTDVFDESR 300 PIKKAKSSND EAFGSGEIIN GTAILEKDIG KNSEQDESCL VTNTDSAATE TDKSLKLQPR 360 EKKIIDFREK LYLAPLTTVG NLPFRRVCKA LGADITCGEM AMCTNLLQGQ ASEWALLRRH 420 SSEDIFGVQI CGAYPDTVAK TVELIEQECS VDFIDINMGC PIDIVVNKGA GSALLTKPMR 480 MKSVIQAASG TVETPITVKV RTAYFEGRNR IDSLIADIEN WGATAVTIHG RSRQQRYSKL 540 ADWDYIYECV KRAPDSLPVL GNGDVYSFLD WNKHKNDCPK LASCMIARGA LIKPWIFTEI 600 KEQRHWDISS GERLNIFKEY ANFGLQHWGS DSKGVETTRH FLLEWLSYTC RYIPVGLLEV 660 IPQRINWRPP SYYGRDDLET MMASDSAADW IRISEMLLGK VPDGFTFAPK HKSNAYDRAE 720 NG

Sequence ? help Back to Top

Protein Sequence Length: 722 aa Download sequence Send to blast

XTETLTGQRG LNRPKMDGVS AQPAVIADDS RISEDTRNSE LDVDGSAAAP VPAQVTPEEL  60
VAKAIAPVKR EFLRPPPVRA SSATNTQNDD VAEAKSASLV KEKKSKRQLK RERRQDLKSA  120
LHLCPEVAKS GKVSSCAYGD KCRFSHDIEA FKAQKPVDLE GKCPFLEVNE GPCPYGLACR  180
FAGTHKNDDD AAVSGGTVRI RRNSSEVNSL NKDVQKLLWK NKMKFTKAEK TLKLLGLVGK  240
MKNFEDKDND DQPVANGSDV DRDNGNAEAI VVGSSNEVEC CSQELADDKP DDTDVFDESR  300
PIKKAKSSND EAFGSGEIIN GTAILEKDIG KNSEQDESCL VTNTDSAATE TDKSLKLQPR  360
EKKIIDFREK LYLAPLTTVG NLPFRRVCKA LGADITCGEM AMCTNLLQGQ ASEWALLRRH  420
SSEDIFGVQI CGAYPDTVAK TVELIEQECS VDFIDINMGC PIDIVVNKGA GSALLTKPMR  480
MKSVIQAASG TVETPITVKV RTAYFEGRNR IDSLIADIEN WGATAVTIHG RSRQQRYSKL  540
ADWDYIYECV KRAPDSLPVL GNGDVYSFLD WNKHKNDCPK LASCMIARGA LIKPWIFTEI  600
KEQRHWDISS GERLNIFKEY ANFGLQHWGS DSKGVETTRH FLLEWLSYTC RYIPVGLLEV  660
IPQRINWRPP SYYGRDDLET MMASDSAADW IRISEMLLGK VPDGFTFAPK HKSNAYDRAE  720
NG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ei9_A	2e-29	367	614	27	266	tRNA-dihydrouridine synthase B
6ei9_B	2e-29	367	614	27	266	tRNA-dihydrouridine synthase B
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027112118.1	0.0	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like isoform X2
Swissprot	Q9T0J6	0.0	DUS3L_ARATH; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBL	A0A068TNN9	0.0	A0A068TNN9_COFCA; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRING	XP_009768328.1	0.0	(Nicotiana sylvestris)

Publications ? help Back to Top
Szponarski W,Sommerer N,Boyer JC,Rossignol M,Gibrat R Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography. Proteomics, 2004. 4(2): p. 397-406 [PMID:14760709]