PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_9855_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NF-YA

Protein Properties

Length: 183aa MW: 20401.9 Da PI: 6.3415

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_9855_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	59.4	1.1e-18	102	142	1	42
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheS 42 +ep+YVNaKQy++Il+RRq+Rak+e ekkl +k rkpy+ S cra_locus_9855_iso_1_len_789_ver_3 102 QEPVYVNAKQYHGILRRRQSRAKAELEKKL-IKVRKPYVVVS 142 69**************************.*****9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.0E-12	100	159	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	18.998	101	138	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.0E-13	103	142	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	106	126	IPR018362	CCAAT-binding factor, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010262	Biological Process	somatic embryogenesis
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0055046	Biological Process	microgametogenesis
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
XDDDDDAARQ SQGAVNQQSD GSYVQEDTNF PTVASNVPPK SNESLMQPPQ FELVGHSIAC 60 ASNPYPDPYY GGMMATFGQP FVHPQLLDMQ HSRMPLPLDM AQEPVYVNAK QYHGILRRRQ 120 SRAKAELEKK LIKVRKPYVV VSTNVLASMV TSSWLFLELG GNSFLALFFC LCCGVEISGS 180 HRW

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027065267.1	8e-75	nuclear transcription factor Y subunit A-1-like
Refseq	XP_027150160.1	8e-75	nuclear transcription factor Y subunit A-1-like
Swissprot	Q9LXV5	1e-35	NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBL	A0A068VE79	1e-72	A0A068VE79_COFCA; Uncharacterized protein
STRING	VIT_06s0004g02270.t01	1e-61	(Vitis vinifera)

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Siriwardana CL, et al. NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T. PLoS Genet., 2016. 12(12): p. e1006496 [PMID:27977687] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]