PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_9855_iso_5

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NF-YA

Protein Properties

Length: 219aa MW: 24094.2 Da PI: 9.3048

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_9855_iso_5	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	104.4	9.8e-33	102	158	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e ekkl +k rkpylheSRh+hAlrR+RgsgGrF cra_locus_9855_iso_5_len_1031_ver_3 102 QEPVYVNAKQYHGILRRRQSRAKAELEKKL-IKVRKPYLHESRHQHALRRARGSGGRF 158 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.4E-35	100	161	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.171	101	161	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	7.3E-28	103	158	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.3E-24	104	126	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	106	126	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.3E-24	135	158	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010262	Biological Process	somatic embryogenesis
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0055046	Biological Process	microgametogenesis
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
XDDDDDAARQ SQGAVNQQSD GSYVQEDTNF PTVASNVPPK SNESLMQPPQ FELVGHSIAC 60 ASNPYPDPYY GGMMATFGQP FVHPQLLDMQ HSRMPLPLDM AQEPVYVNAK QYHGILRRRQ 120 SRAKAELEKK LIKVRKPYLH ESRHQHALRR ARGSGGRFAK KSETQTSNGT GSGSANSSHD 180 SFGRQNSLGA TKNGSTHGGK ENSSSQQWGN VPSNQVDHM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	3e-20	102	174	2	74	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027065267.1	1e-102	nuclear transcription factor Y subunit A-1-like
Refseq	XP_027150160.1	1e-102	nuclear transcription factor Y subunit A-1-like
Swissprot	Q9LXV5	2e-54	NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBL	A0A068VE79	1e-100	A0A068VE79_COFCA; Uncharacterized protein
STRING	PGSC0003DMT400027785	6e-83	(Solanum tuberosum)

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Siriwardana CL, et al. NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T. PLoS Genet., 2016. 12(12): p. e1006496 [PMID:27977687] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]