PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_9855_iso_6
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family NF-YA
Protein Properties Length: 296aa    MW: 32277.7 Da    PI: 5.4734
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_9855_iso_6genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA43.51e-131752003358
                            CBFB_NFYA  33 ksrkpylheSRhkhAlrRpRgsgGrF 58 
                                             +pylheSRh+hAlrR+RgsgGrF
  cra_locus_9855_iso_6_len_1263_ver_3 175 CXLQPYLHESRHQHALRRARGSGGRF 200
                                          5669*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.4E-5152203IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115215.355178203IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.2E-11178200IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
XDDDDDAARQ SQGAVNQQSD GSYVQEDTNF PTVASNVPPK SNESLMQPPQ FELVGHSIAC  60
ASNPYPDPYY GGMMATFGQP FVXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  120
XAGGTQAVGR VSQEKQFPLP VPYXSPAIEN SIVDQEFSVC WHGNLSSIDA KTMMCXLQPY  180
LHESRHQHAL RRARGSGGRF AKKSETQTSN GTGSGSANSS QYVISSDPES LPSHSTEILR  240
SHSEVPDASH AYTNCSDSFG RQNSLGATKN GSTHGGKENS SSQQWGNVPS NQVDHM