PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_9855_iso_8

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NF-YA

Protein Properties

Length: 161aa MW: 17710.5 Da PI: 10.3674

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_9855_iso_8	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	105.3	5.4e-33	9	65	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e ekkl +k rkpylheSRh+hAlrR+RgsgGrF cra_locus_9855_iso_8_len_2357_ver_3 9 QEPVYVNAKQYHGILRRRQSRAKAELEKKL-IKVRKPYLHESRHQHALRRARGSGGRF 65 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.4E-35	7	68	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.171	8	68	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	4.0E-28	10	65	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	5.3E-25	11	33	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	13	33	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	5.3E-25	42	65	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010262	Biological Process	somatic embryogenesis
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0055046	Biological Process	microgametogenesis
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MPLPLDMAQE PVYVNAKQYH GILRRRQSRA KAELEKKLIK VRKPYLHESR HQHALRRARG 60 SGGRFAKKSE TQTSNGTGSG SANSSQYVIS SDPESLPSHS TEILRSHSEV PDASHAYTNC 120 SDSFGRQNSL GATKNGSTHG GKENSSSQQW GNVPSNQVDH M

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	3e-21	9	81	2	74	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011090024.1	6e-56	nuclear transcription factor Y subunit A-1 isoform X2
Refseq	XP_011090025.1	6e-56	nuclear transcription factor Y subunit A-1 isoform X2
Refseq	XP_020552351.1	1e-55	nuclear transcription factor Y subunit A-1 isoform X1
Swissprot	Q9LXV5	3e-37	NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBL	A0A3Q7E9W5	1e-48	A0A3Q7E9W5_SOLLC; Uncharacterized protein
TrEMBL	M1AQ62	2e-47	M1AQ62_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400027785	3e-48	(Solanum tuberosum)

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Siriwardana CL, et al. NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T. PLoS Genet., 2016. 12(12): p. e1006496 [PMID:27977687] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]