PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_9855_iso_9
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family NF-YA
Protein Properties Length: 361aa    MW: 39874.8 Da    PI: 8.0255
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_9855_iso_9genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.32.3e-32209265158
                            CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                          +ep+YVNaKQy++Il+RRq+Rak+e ekkl +k rkpylheSRh+hAlrR+RgsgGrF
  cra_locus_9855_iso_9_len_1459_ver_3 209 QEPVYVNAKQYHGILRRRQSRAKAELEKKL-IKVRKPYLHESRHQHALRRARGSGGRF 265
                                          69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.4E-35207268IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.171208268IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.7E-27210265IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.0E-24211233IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860213233IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.0E-24242265IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
RPGGKSQDRK FSRVSFFSYF VCSAGEFFRP YSSLYRLSMQ PKSKTLDKNE AEANSFNVSN  60
LAVCSERWWN TMGYNSVSPG MMRGSASESS SLEQSMDGQS QSDSRINDDD DDAAXXXXQG  120
AVNQQSDGSY VQEDTNFPTV ASNVPPKSNE SLMQPPQFEL VGHSIACASN PYPDPYYGGM  180
MATFGQPFVH PQLLDMQHSR MPLPLDMAQE PVYVNAKQYH GILRRRQSRA KAELEKKLIK  240
VRKPYLHESR HQHALRRARG SGGRFAKKSE TQTSNGTGSG SANSSQYVIS SDPESLPSHS  300
TEILRSHSEV PDASHAYTNC SDSFGRQNSL GATKNGSTHG GKENSSSQQW GNVPSNQVDH  360
M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-19209281274NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027065267.11e-124nuclear transcription factor Y subunit A-1-like
RefseqXP_027150160.11e-124nuclear transcription factor Y subunit A-1-like
TrEMBLA0A068VE791e-122A0A068VE79_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000277851e-108(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31112248