PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_9969_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 238aa    MW: 25526.8 Da    PI: 5.3835
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_9969_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.41.7e-0856932655
                                  AP2 26 g........krkrfslgkfgtaeeAakaaiaarkkleg 55
                                         g        k+ r++lg++ t+e+Aa+a++ a+ +++g
  cra_locus_9969_iso_4_len_1103_ver_3 56 GypkfxeprKKSRIWLGTYSTPEMAARAHDVAAMSIKG 93
                                         244454553469*********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.26226101IPR001471AP2/ERF domain
SMARTSM003807.1E-1437107IPR001471AP2/ERF domain
CDDcd000185.11E-1762101No hitNo description
SuperFamilySSF541714.12E-1162102IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.4E-1762102IPR001471AP2/ERF domain
PfamPF008472.1E-56493IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MAAESSSYTS SSSSSSSSSR SSSSSSTSSL KKKKQQRPKR QQIRDNNNHS GGVVNGYPKF  60
XEPRKKSRIW LGTYSTPEMA ARAHDVAAMS IKGKSAILNF PQLTESLPRP ASLSPRDVQA  120
AAAKAAAMEE LTITTSSFSP SPSTSSSSSS SMSESTRTET TASEELGQII ELPSLEGSCY  180
DSSESRTELA LFDSAEEGWV FPPWLTSDGD LYGFINIDQA AVGEFLIPSS FDTVKWVS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028097122.15e-61ethylene-responsive transcription factor TINY-like
SwissprotQ9LYD31e-43DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A4D9A3M33e-52A0A4D9A3M3_SALSN; EREBP-like factor
STRINGSolyc06g066540.1.19e-52(Solanum lycopersicum)
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]