PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_9969_iso_5

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

ERF

Protein Properties

Length: 255aa MW: 27569.4 Da PI: 8.4374

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_9969_iso_5	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.2	2e-18	60	110	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr ++ +g+Wv+eIr+p++ + r++lg++ t+e+Aa+a++ a+ +++g cra_locus_9969_iso_5_len_1155_ver_3 60 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYSTPEMAARAHDVAAMSIKG 110 68***998.******843...6********************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	9.5E-13	60	110	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.024	61	118	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.7E-31	61	119	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.86E-21	61	119	IPR016177	DNA-binding domain
SMART	SM00380	4.6E-37	61	124	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.0E-10	62	73	IPR001471	AP2/ERF domain
CDD	cd00018	4.01E-30	62	118	No hit	No description
PRINTS	PR00367	5.0E-10	84	100	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MAAESSSYTS SSSSSSSSSR SSSSSSTSSL KKKKQQRPKR QQIRDNNNHS GGVVNGSKHP 60 VYRGVRMRSW GKWVSEIREP RKKSRIWLGT YSTPEMAARA HDVAAMSIKG KSAILNFPQL 120 TESLPRPASL SPRDVQAAAA KAAAMEELTI TTSSFSPSPS TSSSSSSSMS ESTRTETTAS 180 EELGQIIELP SLEGSCYDSS ESRTELALFD SAEEGWVFPP WLTSDGDLYG FINIDQAAVG 240 EFLIPSSFDT VKWVS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	3e-20	51	119	4	73	Ethylene-responsive transcription factor ERF096
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Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028097122.1	8e-79	ethylene-responsive transcription factor TINY-like
Swissprot	Q9LYD3	5e-61	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	A0A3Q7GXB5	3e-70	A0A3Q7GXB5_SOLLC; Uncharacterized protein
TrEMBL	A0A4D9A3M3	6e-70	A0A4D9A3M3_SALSN; EREBP-like factor
STRING	Solyc06g066540.1.1	5e-71	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA212	24	225

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485]