PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID e_gw1.01.00.699.1
Common NameOT_ostta01g05160
Organism
Ostreococcus tauri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family M-type_MADS
Protein Properties Length: 69aa    MW: 8157.51 Da    PI: 9.2004
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
e_gw1.01.00.699.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.94.1e-26959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       +ri +++nrqvtf+kR+ng++KKA ELSvLCd ++a++i+ s+ kly yss
  e_gw1.01.00.699.1  9 ERIGDERNRQVTFTKRKNGLMKKAMELSVLCDCDIAMVIYNSHEKLYQYSS 59
                       6899*********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.389161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.32E-29169IPR002100Transcription factor, MADS-box
SMARTSM004322.2E-32160IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-25323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003196.3E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-253859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:0090376Biological Processseed trichome differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 69 aa     Download sequence    Send to blast
MGRKKIKIER IGDERNRQVT FTKRKNGLMK KAMELSVLCD CDIAMVIYNS HEKLYQYSSG  60
EIEDVLERF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-29169169MEF2 CHIMERA
6byy_B1e-29169169MEF2 CHIMERA
6byy_C1e-29169169MEF2 CHIMERA
6byy_D1e-29169169MEF2 CHIMERA
6bz1_A1e-29169169MEF2 CHIMERA
6bz1_B1e-29169169MEF2 CHIMERA
6bz1_C1e-29169169MEF2 CHIMERA
6bz1_D1e-29169169MEF2 CHIMERA
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005811e-63CP000581.1 Ostreococcus lucimarinus CCE9901 chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001415963.13e-40predicted protein
RefseqXP_022838327.12e-39Transcription factor, MADS-box
SwissprotO550872e-28MEF2B_MOUSE; Myocyte-specific enhancer factor 2B
TrEMBLA0A1Y5HYX63e-43A0A1Y5HYX6_OSTTA; Uncharacterized protein (Fragment)
STRINGABO942551e-39(Ostreococcus 'lucimarinus')
STRINGA0A090LYG56e-39(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP36561314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.29e-24MIKC_MADS family protein
Publications ? help Back to Top
  1. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]