PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID e_gw1.04.00.501.1
Common NameOt04g04990, OT_ostta04g04770
Organism
Ostreococcus tauri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family MYB_related
Protein Properties Length: 273aa    MW: 30167 Da    PI: 10.2746
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
e_gw1.04.00.501.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.86.1e-144084147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       r +WT+ E+ ++v+a +++  + Wk+I +++  +++  q++s+ qky
  e_gw1.04.00.501.1 40 RVSWTAKEHARFVKALQMYSRD-WKKIEQYVR-TKSVVQIRSHAQKY 84
                       679****************977.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-73393IPR009057Homeodomain-like
SuperFamilySSF466892.09E-153488IPR009057Homeodomain-like
PROSITE profilePS5129415.1683589IPR017930Myb domain
TIGRFAMsTIGR015578.5E-153887IPR006447Myb domain, plants
SMARTSM007172.0E-93987IPR001005SANT/Myb domain
PfamPF002491.1E-114084IPR001005SANT/Myb domain
CDDcd001676.10E-84285No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MRAREGEAAG GADATRLPGT SATTSEGKKA RKPYTQTKTR VSWTAKEHAR FVKALQMYSR  60
DWKKIEQYVR TKSVVQIRSH AQKYFLKMIK NGEGDALPPP RQKKAPAATA AELKLHGDSS  120
ARAEAMRFKV AKLAHTPHPN LTGYHIRDLT VKSQTPNFSN VYDFLASFFH TKKSGCTQGV  180
EPAESAQLDH LNTMNDVDKE TALALAQNMR RNLTSREMWK QQVDLVKDGY VTFLDKDDLR  240
AFHSTTTPKN ATALDANAES GGGSNEETQT GP*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBMTransfer from PK02532.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7400780.0AY740078.1 Ostreococcus tauri MYB transcription factor 1 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003079017.10.0Myb domain, plants
TrEMBLA0A454XIR10.0A0A454XIR1_OSTTA; MYB transcription factor 1
TrEMBLQ5IFN80.0Q5IFN8_OSTTA; MYB transcription factor 1
STRINGQ5IFN80.0(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP4541427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01520.12e-34MYB_related family protein
Publications ? help Back to Top
  1. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]