PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID e_gw1.06.00.251.1
Organism
Ostreococcus tauri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family MYB_related
Protein Properties Length: 370aa    MW: 41264.4 Da    PI: 11.7942
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
e_gw1.06.00.251.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.76.3e-143577347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        WT+ E+e++v+a++++  + W+++ +++  ++t+ q++s+ qky
  e_gw1.06.00.251.1 35 TWTANEHERFVEAIRLHQRD-WRAVTAHVR-TKTPTQIRSHAQKY 77
                       7*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.77E-133183IPR009057Homeodomain-like
SMARTSM007175.2E-93280IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.1E-113480IPR006447Myb domain, plants
PROSITE profilePS5129412.1953482IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.1E-73577IPR009057Homeodomain-like
CDDcd001672.15E-73578No hitNo description
PfamPF002491.7E-113577IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MSTATSISPA RFEDEVKDAA KKPRKPYVRA NAPTTWTANE HERFVEAIRL HQRDWRAVTA  60
HVRTKTPTQI RSHAQKYFAK LRRDASGEAP PRTRGRRVDL SRLAVKLHAD ARGRTEAMRV  120
RVERTSDGSF VDRARGAYRR AARDRAETPN LSAVYGFLAA FFDVDPTTCD DDNRRRAHAE  180
ASARLDALRA RDRGAALDVL ANLRRIRESS ASRSATDAMV AVNLHAAVAA VDAERACEDE  240
EGSSGAILSG DDATSRTSGE RASPRRSHRQ GRARAFTVRR KCALGRCACE PYASMRKMCF  300
TRDSTIAFST PRDAATAHSR ASRSTPRMRR ARAIDHARRA LGALVNAHER RAVRSRHVFA  360
VRRRWAIDE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7400770.0AY740077.1 Ostreococcus tauri MYB transcription factor 2 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003080049.21e-177Myb domain, plants
TrEMBLQ5IFN90.0Q5IFN9_OSTTA; MYB transcription factor 2
STRINGA0A096PAD61e-177(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP4541427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.21e-19MYB_related family protein