PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

e_gw1.11.310.1

Organism

Ostreococcus sp. RCC809

Taxonomic ID

385169

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus

Family

C3H

Protein Properties

Length: 358aa MW: 40402.9 Da PI: 7.2736

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
e_gw1.11.310.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.8	1.4e-11	9	31	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++far+G+C+yGd C+F+H+ e_gw1.11.310.1 9 PPCKHFARGGFCRYGDACRFSHD 31 89********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	17.45	5	33	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.2E-7	5	32	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.24E-6	8	33	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.2E-9	9	31	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.7E-7	10	32	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:3.40.50.150	9.7E-6	34	104	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
SuperFamily	SSF53335	1.1E-6	35	118	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MDADASRAPP CKHFARGGFC RYGDACRFSH DARATSDAPR SRARARRRRR ASHEKVRAFT 60 DWLRETFDLR DARVVDVAGG KGTLAYDVLQ RTEAAEVCVI DPRRMRRGRL RRRWRDRLDE 120 TRRDADAGEG EGERARGREV REPKHVRVYF TRAVWEGDEA SVRASYELAR KSRWCVKGLV 180 ADGGGTYEVG ANEASRVKVT NEGVFAPIRD RNYQRSNEGD DEDDDKHGDT DDDDDDEEPD 240 VSAEETRAAL LDVLERCTHV IAMHPDQATD AVIEFAIERR LPFAIVPCCV YSKDFPHRRL 300 RSGARVSTHR DLVDHLIERA FAVDVHAREL PFPGKSIVVY GTGARRDACA PCLDPPA*

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MDADASRAPP CKHFARGGFC RYGDACRFSH DARATSDAPR SRARARRRRR ASHEKVRAFT  60
DWLRETFDLR DARVVDVAGG KGTLAYDVLQ RTEAAEVCVI DPRRMRRGRL RRRWRDRLDE  120
TRRDADAGEG EGERARGREV REPKHVRVYF TRAVWEGDEA SVRASYELAR KSRWCVKGLV  180
ADGGGTYEVG ANEASRVKVT NEGVFAPIRD RNYQRSNEGD DEDDDKHGDT DDDDDDEEPD  240
VSAEETRAAL LDVLERCTHV IAMHPDQATD AVIEFAIERR LPFAIVPCCV YSKDFPHRRL  300
RSGARVSTHR DLVDHLIERA FAVDVHAREL PFPGKSIVVY GTGARRDACA PCLDPPA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	106	116	RGRLRRRWRDR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003082369.1	1e-107	Putative E3 ubiquitin-protein ligase,makorin-related
TrEMBL	Q00XT6	1e-105	Q00XT6_OSTTA; Putative E3 ubiquitin-protein ligase,makorin-related
STRING	Q00XT6	1e-106	(Ostreococcus tauri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP348	8	11