PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID e_gw1.12.263.1
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family AP2
Protein Properties Length: 337aa    MW: 37862 Da    PI: 6.0445
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
e_gw1.12.263.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.44.1e-09145190150
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaar 50 
                     s+++GV+++  +g+++A+I   +   g +k+ +lg f+t+ eAa a++ a+
  e_gw1.12.263.1 145 SRFRGVTRHA-KGKFEARIGQiV---G-KKYRYLGLFDTETEAAVAYDCAA 190
                     789****998.7******99966...2.5**********99*******887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103210.63927110IPR001471AP2/ERF domain
CDDcd000183.92E-1164110No hitNo description
SMARTSM003802.3E-1165116IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-1069111IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-1073110IPR001471AP2/ERF domain
PfamPF008473.1E-4145190IPR001471AP2/ERF domain
CDDcd000188.44E-17145205No hitNo description
SuperFamilySSF541711.05E-14145205IPR016177DNA-binding domain
PROSITE profilePS5103214.447146203IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-13146203IPR001471AP2/ERF domain
SMARTSM003804.8E-23146209IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0010093Biological Processspecification of floral organ identity
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MWSGCALEDS FELDPLEAGE EPRGGDAFGG LDHELNGYID EELFNLCGFA TRTSTEKRSV  60
RSTSKYRGSH VWHRGKQVYL GGFSSEEQAA TAYDIIAIKC RGERAQTNFD LRNYAGELAN  120
LDSITEEDLV LSLRRQSKGF SKGSSRFRGV TRHAKGKFEA RIGQIVGKKY RYLGLFDTET  180
EAAVAYDCAA VQEKGLDALT NFDISEYSEI LAKHYQNEDV VQTGSKRKYA RIDPKVSERN  240
FRAELAASKE LGELSSRDMK PGRAIERDPS ANALETVRRV FDAEIRARPT ARDDESALHD  300
DRRATDAIRE LRRIVEEAQT ALETGRERLD DANRRR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022841072.11e-112DNA-binding domain
TrEMBLA0A090MD561e-110A0A090MD56_OSTTA; DNA-binding domain
STRINGA0A090MD561e-111(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP561657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.22e-44AP2 family protein