PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID e_gw1.16.472.1
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family Whirly
Protein Properties Length: 173aa    MW: 18106.5 Da    PI: 9.9804
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
e_gw1.16.472.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly190.72.4e-59171561138
          Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelana..taerkydWekkqsfalsatevaelvd.laskesceffhdpaakgsneGkvrk 92 
                     +++k+kaa+k+kavrptfe+++ g+ ++kraGg+llelana  ++ r ydW +k sf+ls+te+ael+d las ++c+ffhdp a+++n+G v+k
  e_gw1.16.472.1  17 GIFKSKAAMKLKAVRPTFETDANGRKIMKRAGGVLLELANAasAGSRSYDWTNKSSFMLSGTEAAELADrLASDGACSFFHDPNAGSANRGSVNK 111
                     79*************************************9833589************************************************* PP

          Whirly  93 alkvePlpdGs.Glfvnlsvtnslvkgnesf.svPvskaefavlrsll 138
                     a+kveP+pdGs G+fvnls+t +   g + f svPvs++e+a++r++l
  e_gw1.16.472.1 112 AFKVEPMPDGSgGVFVNLSTTAN---GTKAFhSVPVSYGESAAIRRVL 156
                     ***********9********988...777777*************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.106.0E-506170IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544474.71E-2610169IPR009044ssDNA-binding transcriptional regulator
PfamPF085361.5E-4618155IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MRPTTTNASG GVYVDYGIFK SKAAMKLKAV RPTFETDANG RKIMKRAGGV LLELANAASA  60
GSRSYDWTNK SSFMLSGTEA AELADRLASD GACSFFHDPN AGSANRGSVN KAFKVEPMPD  120
GSGGVFVNLS TTANGTKAFH SVPVSYGESA AIRRVLAFLV PRVLGFDDVF AP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1l3a_A5e-281216638190p24: plant transcriptional regulator PBF-2
1l3a_B5e-281216638190p24: plant transcriptional regulator PBF-2
1l3a_C5e-281216638190p24: plant transcriptional regulator PBF-2
1l3a_D5e-281216638190p24: plant transcriptional regulator PBF-2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001421958.11e-79predicted protein, partial
TrEMBLA4S8W43e-78A4S8W4_OSTLU; Uncharacterized protein (Fragment)
STRINGABP002525e-79(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP20261516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02740.22e-27ssDNA-binding transcriptional regulator