PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID e_gw1.16.65.1
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family C3H
Protein Properties Length: 446aa    MW: 50023.9 Da    PI: 9.6981
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
e_gw1.16.65.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.11.1e-06415435627
                    -SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                    C++f r G C+ Gd CkF Hg+
  e_gw1.16.65.1 415 CKYFER-GKCWNGDECKFRHGR 435
                    **9999.*************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.845408436IPR000571Zinc finger, CCCH-type
SMARTSM003560.0031410435IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6410434IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-5414435IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-5415435IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
HCKNLANNLI KISENDTKVI MHSQYIGAQM HLLDPNANDE LTRMTHDPKC SDAGYLWRAI  60
RAFSEALFEQ KSVSSFIQRA LPHSLRKEAR DSLTARIQKE GAHEYLVCRV QLIPALVICA  120
YASMDNLNVQ RVHSLFKQSA QEALPDSASF LELQGFVHIS PEIDVVKRAT IDQIKRLRNK  180
GIEFNSGITI EEANAIEKGV NERKRVSKGN DASKADDQPQ GTVFSSLGEA GVRRTASETL  240
KPTKPKVTKP STSVRKSPPQ TTKKATIKIE QPFSRRCEIC EQDVKGVDEK QLENNWKMHL  300
KSKAHAKSLL GPEPDPNAPP RDAALESFSA ADQAYAVMIE VPPPPSAPAL KTVKVPPPTG  360
TSQHQKSNTL SDHKQNFIKK RLQEVDSAQK HGKRRRLDEY IDKPEPRPYK RVLYCKYFER  420
GKCWNGDECK FRHGRMPDSP CDSFG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1378395KKRLQEVDSAQKHGKRRR
2392396KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1313022