PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID e_gw1.17.282.1
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family bHLH
Protein Properties Length: 221aa    MW: 24554 Da    PI: 5.479
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
e_gw1.17.282.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.36.5e-0967116254
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++a+  rE+ RRd +Ns++++L  +l       skK +K + +  A++ Ik L
  e_gw1.17.282.1  67 KKAKRTREKLRRDSLNSRYQQLSVVLELG---ESKKSDKEALVSAATDLIKRL 116
                     68899******************999998...9******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.26E-860121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.02E-563120No hitNo description
PROSITE profilePS5088810.97665116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-567134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-667116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00571122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MVPANDWLSN FLKDLDEEQT TAPDVVNSGE PTDEATGLGS LDVLTAVDAP SRPTTLKPST  60
TLSEQTKKAK RTREKLRRDS LNSRYQQLSV VLELGESKKS DKEALVSAAT DLIKRLRAEQ  120
VRLANMIMRF QDEKLQKADL LRALAMEREQ LVKEKAQLLE EKLHVEGHLQ RFLVSMPFAS  180
PMRDMVSTKS TSGVPAWTMP APFAPANEEE DNVTLRPPVA *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001422567.11e-59predicted protein
TrEMBLA4SB733e-58A4SB73_OSTLU; Uncharacterized protein
STRINGABP008845e-59(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP546069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.13e-15bHLH family protein