PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID e_gw1.19.20.1
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family CPP
Protein Properties Length: 782aa    MW: 85524 Da    PI: 6.7458
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
e_gw1.19.20.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR452.2e-141148240
            TCR  2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40
                   e+k+CnCk+skClk+YCeCfaagk+C+  C+C +CkN+ 
  e_gw1.19.20.1 11 EHKRCNCKNSKCLKLYCECFAAGKYCDG-CNCFNCKNNA 48
                   789*************************.********86 PP
2TCR50.83.3e-1699138140
            TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                    ++++gC+Ck+s ClkkYCeCf+a  +C e+CkC dCkN+e
  e_gw1.19.20.1  99 RHNRGCHCKRSGCLKKYCECFQAAIFCHETCKCVDCKNHE 138
                    5899**********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.3E-151050IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163433.69211139IPR005172CRC domain
PfamPF036381.2E-101347IPR005172CRC domain
SMARTSM011145.8E-1899140IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.5E-12102137IPR005172CRC domain
SuperFamilySSF520587.48E-49234500IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.2E-57234482IPR032675Leucine-rich repeat domain, L domain-like
PROSITE profilePS514504.516242263IPR001611Leucine-rich repeat
SMARTSM003644.4263282No hitNo description
SMARTSM003694.6263286IPR003591Leucine-rich repeat, typical subtype
PROSITE profilePS514506.026265286IPR001611Leucine-rich repeat
SMARTSM00364120287306No hitNo description
SMARTSM0036937287309IPR003591Leucine-rich repeat, typical subtype
SMARTSM0036918310333IPR003591Leucine-rich repeat, typical subtype
PROSITE profilePS514505.094312333IPR001611Leucine-rich repeat
SMARTSM003646.3333352No hitNo description
SMARTSM0036938334356IPR003591Leucine-rich repeat, typical subtype
PROSITE profilePS514505.44335356IPR001611Leucine-rich repeat
SMARTSM003641356375No hitNo description
PROSITE profilePS514507.335358379IPR001611Leucine-rich repeat
SMARTSM0036910378400IPR003591Leucine-rich repeat, typical subtype
PROSITE profilePS514505.741380401IPR001611Leucine-rich repeat
SMARTSM0036425401420No hitNo description
SMARTSM0036926401423IPR003591Leucine-rich repeat, typical subtype
PROSITE profilePS514506.642403425IPR001611Leucine-rich repeat
SMARTSM00364580424443No hitNo description
SMARTSM003691.5424447IPR003591Leucine-rich repeat, typical subtype
PROSITE profilePS514506.688426447IPR001611Leucine-rich repeat
PROSITE profilePS514506.187449470IPR001611Leucine-rich repeat
SMARTSM00369240449469IPR003591Leucine-rich repeat, typical subtype
SuperFamilySSF534744.46E-5549685IPR029058Alpha/Beta hydrolase fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 782 aa     Download sequence    Send to blast
MSVPHGTPQR EHKRCNCKNS KCLKLYCECF AAGKYCDGCN CFNCKNNAAF ATERREAVEA  60
TLERNPNAFR PKIAVVASPG GVGHAGGGVD GDGGDVVARH NRGCHCKRSG CLKKYCECFQ  120
AAIFCHETCK CVDCKNHEGS DAYATVKRVH GPDARFHDHA STAMSPSPGR RRALGVGGDG  180
GALPGSAGTS ATEAATVPLM HNLVQQGAVE ELARILLAVA DETKAASNTP TEALRRIEKA  240
KETKRLDLSG LGLREIPPET YELEGLLELQ VSNNNLYDVP ESLLEKLTTI ERLGLAGNRL  300
RALPRSVGGL RALRGVWAHG NCLKEIPEEL CECESLRNLV VGGNRLRALP ENMSRLKSLE  360
ELSAPGNQLR ALPDLGSLPL LRDIDLHGNV IERLPEDMSG LRALESLSVQ GNRLKKIPKS  420
LTTLRRLRAL NLAENEIELL PDEISEMMML TSLWLYSNAL RSIPETMQKM PSLRQMWIEG  480
NDALNGDALD AFVSAMSGHK TLATFGVDQR QSAKMRVRDQ FITVAETPEG APAGYFKLVR  540
WNGSEDEDAR VDAPVLVVSF GSAPGVPNWG GLLKKLRKTV RDGDSYDVLY VCDVERSWYA  600
SNDLGVDQDA EFRRWNEALR DACARYRRVL YIGDSMGASA SLMFAEHATR VLAFCPQVDL  660
YASSIRPSRS NVWFKRFRRI LREGLEASSA DVDVHTGSWA HDTHQASLLP SDKVTHVVYR  720
VDSHRLALAL DGEDKLLPIV RDAFDGEIAA ARGDAEDETD ANGDSKTVLD AFAPWQSIGL  780
G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-3171466130Protein lin-54 homolog
5fd3_B2e-3171466130Protein lin-54 homolog
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00269DAPTransfer from AT2G20110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022840643.10.0Leucine-rich repeat
TrEMBLA0A096P9H20.0A0A096P9H2_OSTTA; Leucine-rich repeat
TrEMBLA0A1Y5I2F00.0A0A1Y5I2F0_OSTTA; Tesmin/TSO1-like CXC domain-containing protein
STRINGA0A096P9H20.0(Ostreococcus tauri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20110.13e-44Tesmin/TSO1-like CXC domain-containing protein