PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

e_gw1.19.315.1

Common Name

COCSUDRAFT_19782

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

C3H

Protein Properties

Length: 128aa MW: 14409.4 Da PI: 8.0064

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
e_gw1.19.315.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.8	5.9e-11	70	90	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ GtCk+Gd+C+FaHg e_gw1.19.315.1 70 ACPDFRK-GTCKRGDQCPFAHG 90 5****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	2.62E-6	65	93	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.328	65	92	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.7E-8	65	91	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.3E-7	70	92	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.7E-9	70	90	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	25	100	123	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 128 aa Download sequence Send to blast
MQGAHVPDVI PLQGNLLDAE FRTDDFRINY FKVTECSNIE PHDWTLCAFA HVGEKARRRG 60 TAAFKYVATA CPDFRKGTCK RGDQCPFAHG VFESWLHPGR YRTQLCKDGL ECDRPVCFFA 120 HSIKASL*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005643920.1	2e-92	hypothetical protein COCSUDRAFT_19782
Swissprot	Q9LXV4	7e-43	C3H56_ARATH; Zinc finger CCCH domain-containing protein 56
TrEMBL	I0YLV7	5e-91	I0YLV7_COCSC; Uncharacterized protein
STRING	XP_005643920.1	9e-92	(Coccomyxa subellipsoidea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP60	15	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12850.1	3e-45	CCCH-type zinc finger protein with ARM repeat domain

Link Out ? help Back to Top
Entrez Gene	17037316

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]