PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID e_gw1.2.36.1
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family C3H
Protein Properties Length: 987aa    MW: 106571 Da    PI: 6.3526
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
e_gw1.2.36.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.12.5e-12948973227
                   -S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                   +++ C f+++tG Ck+G++CkF+H++
  e_gw1.2.36.1 948 GQAVCEFYMKTGRCKFGPSCKFHHPE 973
                   7899********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576134No hitNo description
Gene3DG3DSA:2.140.10.105.5E-2339333IPR027295Quinoprotein alcohol dehydrogenase-like domain
SMARTSM005640.794679IPR018391Pyrrolo-quinoline quinone beta-propeller repeat
SuperFamilySSF509981.96E-2055331IPR011047Quinoprotein alcohol dehydrogenase-like superfamily
PfamPF133601.7E-1261332IPR002372Pyrrolo-quinoline quinone repeat
SMARTSM005640.0012159191IPR018391Pyrrolo-quinoline quinone beta-propeller repeat
SMARTSM005640.0086205237IPR018391Pyrrolo-quinoline quinone beta-propeller repeat
SMARTSM002202.9E-40498777IPR000719Protein kinase domain
PROSITE profilePS5001137.799498777IPR000719Protein kinase domain
Gene3DG3DSA:3.30.200.208.7E-16499577No hitNo description
SuperFamilySSF561121.48E-55502786IPR011009Protein kinase-like domain
PfamPF000691.7E-40502775IPR000719Protein kinase domain
Gene3DG3DSA:1.10.510.102.9E-43608802No hitNo description
PROSITE patternPS001080633645IPR008271Serine/threonine-protein kinase, active site
PROSITE profilePS5139236.269780912IPR010513KEN domain
CDDcd104222.18E-59781910No hitNo description
PfamPF064792.3E-34784910IPR010513KEN domain
SMARTSM005804.3E-14843897IPR018997PUB domain
PROSITE profilePS5010316.718946974IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-8946973IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-6948974IPR000571Zinc finger, CCCH-type
PfamPF006428.9E-10948973IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-6951973IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006397Biological ProcessmRNA processing
GO:0006987Biological Processactivation of signaling protein activity involved in unfolded protein response
GO:0008380Biological ProcessRNA splicing
GO:0009751Biological Processresponse to salicylic acid
GO:0009816Biological Processdefense response to bacterium, incompatible interaction
GO:0046777Biological Processprotein autophosphorylation
GO:0042406Cellular Componentextrinsic component of endoplasmic reticulum membrane
GO:0004521Molecular Functionendoribonuclease activity
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 987 aa     Download sequence    Send to blast
MATVRRARWT MRRARGRWTT VVIAVVVVVV ALACVTCEGG ATATSSPRND DGAPLIVVAL  60
DGVVRALDAD TGRNLWSFDS GGALSGASWD AGSSSSRGEI GGGAPADSVA TTTPTDPARR  120
RNVFPGVDGA LYAHHVVDGS KHVVRRLPVT TRELVDASPS ATRDGALVVG RRSSTIYALN  180
PRTGAVVRSV NVDGTITSVA SDGDEDDEED ALVYVGRTEY VVRSVDASTG EERWNVTHGE  240
LRSLARDEET GALQIGQDRA RDAGSYAVGP GNVVQSVDEK TGKVRWSKRL SSLPLGVSDA  300
RGKVIVENAA QIQGESDDRI IIGAHEGGLF ALPYTANAGD GLRDGGDSSN ALVTISDRED  360
FIRIDIGSDE DDWSCIPEDL VKDALNKQRN ELPSGGGGSR TARAALLGGA VVVVVFSVYL  420
THAKRRAELD SAEAPSANAS ESAVEPEEQP QLSAAAKKRA KKRAKQAEAK AAEAELAAKI  480
QAAMEEKSRE DTRVGRLVVK PSVLGYGSCG TIVFEGEMDG RRVAVKRLLA QFHELARKEL  540
KALIASDEHP NILRCFAFEE DSNFVYMALE LCASSLARVV DPVDDETNGQ SGGAANALNI  600
QCVDAKTKRP TPECMRILHD VVSGLAALHD QGIVHRDLKP QNVLITSAGR GKIADMGLAK  660
RLNISDGTSF ETHVVGGPNA NNAAGTSGWQ APERLTRGRQ SRSVDVFSLG CLMYYSLTGG  720
SHPFGERLER DSNVIANKFD VSKLDFFPEA EALVRACIDA DPSKRPSAKD ILAHPMWWDA  780
EKKIQFLIDA SDRVELEDRM SDRTMLRSLE MNARRAIRCD DWTVKLDAAL LENLGRYREY  840
DGSSLRDLLR VIRNKANHYR ELPPKLQRLL GSYPDGLWRY VSVRFPSLLL GVRDFFAPTA  900
SSEPTLGKYF LGLEAAVTTF TPSLALDVDD AVPQTPLVAP QVFPSRPGQA VCEFYMKTGR  960
CKFGPSCKFH HPEDAGHWDL PPIRKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3fbv_B1e-10149791034446Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_C1e-10149791034446Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_D1e-10149791034446Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_E1e-10149791034446Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_F1e-10149791034446Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_G1e-10149791034446Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_H1e-10149791034446Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_I1e-10149791034446Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_J1e-10149791034446Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_K1e-10149791034446Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_L1e-10149791034446Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_M1e-10149791034446Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_N1e-10149791034446Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_A1e-10149791034446Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_B1e-10149791034446Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_C1e-10149791034446Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_D1e-10149791034446Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_E1e-10149791034446Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_F1e-10149791034446Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_G1e-10149791034446Serine/threonine-protein kinase/endoribonuclease IRE1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003075231.20.0Quinonprotein alcohol dehydrogenase-like superfamily
TrEMBLA0A090MC520.0A0A090MC52_OSTTA; Quinonprotein alcohol dehydrogenase-like superfamily
STRINGA0A090MC520.0(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP28241112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12020.21e-15WRKY family protein