PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID e_gw1.2.667.1
Common NameCOCSUDRAFT_12315
Organism
Coccomyxa subellipsoidea C-169
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family MYB_related
Protein Properties Length: 146aa    MW: 15969.2 Da    PI: 10.5142
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
e_gw1.2.667.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.61.8e-104193347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-H..HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg......kgRtl..kqcksrwqky 47
                     +WT+eE+ l++ + +++G+g+W++I+r +       ++R++   q+ s+ qky
    e_gw1.2.667.1 41 PWTEEEHRLFLMGLAKFGKGDWRSISRSFVmlsmhgLTRCAffGQVASHAQKY 93
                     7**************************99988887777777444777777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.6043498IPR017930Myb domain
SuperFamilySSF466895.23E-133699IPR009057Homeodomain-like
SMARTSM007173.0E-43896IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.4E-123896IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.9E-83969IPR009057Homeodomain-like
CDDcd001679.78E-84169No hitNo description
PfamPF002496.1E-84193IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
QEDVRNIESG KVPLPKYLAS AEPASAAKSK ASEQERRKGI PWTEEEHRLF LMGLAKFGKG  60
DWRSISRSFV MLSMHGLTRC AFFGQVASHA QKYFIRLNSM NKKDKRRSSI HDITNPGGVS  120
GDVTGVLPSF ACSHSSYSPL LGGGR*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005650853.11e-105hypothetical protein COCSUDRAFT_12315, partial
SwissprotQ9FNN61e-38SRM1_ARATH; Transcription factor SRM1
TrEMBLI0Z6P01e-103I0Z6P0_COCSC; Uncharacterized protein (Fragment)
STRINGXP_005650853.11e-104(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP3221529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.14e-37MYB family protein
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]
  2. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  3. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]