PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID e_gw1.20.00.75.1
Common NameOT_ostta20g00060
Organism
Ostreococcus tauri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family HSF
Protein Properties Length: 86aa    MW: 10246.4 Da    PI: 8.4812
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
e_gw1.20.00.75.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind88.21.1e-27186599
                      HHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXX CS
      HSF_DNA-bind  5 klyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikr 99
                      k+++++ de+ +++i w+eng++f v++++ ++++ Lpk+FkhsnfaSFvRQLn YgF+k ++++          eF  + F++g+ ell+++kr
  e_gw1.20.00.75.1  1 KTWNLVTDEQSNDVIAWNENGRTFTVWKPDVLESEYLPKTFKHSNFASFVRQLNNYGFRKCHSDR---------YEFGVEGFERGRPELLTTLKR 86
                      89************************************************************999.........78**************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.8E-29181IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.5E-26186IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.8E-26186IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.65E-26186IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.2E-83648IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.2E-84961IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
KTWNLVTDEQ SNDVIAWNEN GRTFTVWKPD VLESEYLPKT FKHSNFASFV RQLNNYGFRK  60
CHSDRYEFGV EGFERGRPEL LTTLKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B2e-181868104Heat shock factor protein 2
5d8l_B2e-181868104Heat shock factor protein 2
5d8l_D2e-181868104Heat shock factor protein 2
5d8l_F2e-181868104Heat shock factor protein 2
5d8l_H2e-181868104Heat shock factor protein 2
5hdk_A2e-1818613109Heat shock factor protein 2
5hdk_B2e-1818613109Heat shock factor protein 2
5hdk_C2e-1818613109Heat shock factor protein 2
5hdk_D2e-1818613109Heat shock factor protein 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022840597.12e-58Heat shock transcription factor family
SwissprotP223356e-28HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A096PA505e-57A0A096PA50_OSTTA; Heat shock transcription factor family
STRINGA0A096PA509e-58(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP5221523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.11e-27heat shock transcription factor B2A
Publications ? help Back to Top
  1. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]
  2. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]