PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID e_gw1.20.30.1
Common NameCOCSUDRAFT_19841
Organism
Coccomyxa subellipsoidea C-169
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family C3H
Protein Properties Length: 670aa    MW: 73537.1 Da    PI: 7.3704
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
e_gw1.20.30.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.41.9e-068197926
                   GGGTS--TTTTT-SS-SS CS
        zf-CCCH  9 fartGtCkyGdrCkFaHg 26
                   +ar  +C+yGd+CkF+H+
  e_gw1.20.30.1 81 HAR-DQCPYGDKCKFNHD 97
                   555.58***********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.2E-47697IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.3437799IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.20.20.703.1E-70305547IPR013785Aldolase-type TIM barrel
SuperFamilySSF513956.11E-60309618No hitNo description
CDDcd028011.35E-89309543No hitNo description
PfamPF012078.9E-50312545IPR001269tRNA-dihydrouridine synthase
PROSITE patternPS011360393411IPR018517tRNA-dihydrouridine synthase, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002943Biological ProcesstRNA dihydrouridine synthesis
GO:0055114Biological Processoxidation-reduction process
GO:0017150Molecular FunctiontRNA dihydrouridine synthase activity
GO:0046872Molecular Functionmetal ion binding
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MEKPEESAEA RMSRGLAPIK REYIRKAAPR GTIDDKIYKA EQQRNNGASK VASEKKSRRK  60
MKKAMHPKAS QFRAGDLCFN HARDQCPYGD KCKFNHDIVA YAAAKQPDLP GRCPSSAMPE  120
CPYGRCLHTC CLTFCSEHLQ NMHARMPDLP EPPTTNTLDK DLQGSLRRST YDFGRAQEVL  180
SNLGIKSSWR FGKDTGSKQK AQHPAPENNA PEDQNGHEHE DAQPEIGLQE PDPKRQKTDS  240
SAPADVSAAA ADASGAADVS IPADVSTAAA DASGACIGAE AAAEAGSAHA ETEATPPVRE  300
KRRIDFKGKL YLAPLTTVGN LPFRRVCKQL GADITCGEMA LATNLLQGQA SEWALLKRHP  360
SEDLFGVQVC GGYADSLARC AQLLEEHVDA DFVDVNMGCP IDLVCNRGAG SSLLNKPQRI  420
EQISRSMSSI LSCPLTIKVR KGYYDGDDNV HAWLPKAPSW GVSAATLHGR TRQQRYTKLA  480
DWEYIQSATA AAPGLQLIGN GDIMSFTEYN ERTVACPDLA TVMFARGALI KPWLFTEIKE  540
QRHWDISAGE RLDIFKRFCS HGLLHWGSDA RGVESTRRFL LEWMSFTHRY IPLELMEVVP  600
QRLHWRAPAY VGRSQLETLL ASESAADWVR ISEMLLGPVP ANFSFAPKHK ANAYANSEGG  660
MAFEAQAEG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ei9_A1e-2230656127281tRNA-dihydrouridine synthase B
6ei9_B1e-2230656127281tRNA-dihydrouridine synthase B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15462KKSRRKMKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005643593.10.0FMN-linked oxidoreductase
TrEMBLI0YKY00.0I0YKY0_COCSC; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRINGXP_005643593.10.0(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP58777
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]