PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID e_gw1.26.286.1
Common NameCHLNCDRAFT_27455
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family C3H
Protein Properties Length: 72aa    MW: 8160.41 Da    PI: 9.0983
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
e_gw1.26.286.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.95.9e-12530126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    ++++ C+f+++tG+C++G+ Ck++H+
  e_gw1.26.286.1  5 PGQPVCDFYQKTGHCRFGELCKYHHP 30
                    5789*********************8 PP
2zf-CCCH391.3e-124671126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    ++++ C f+++tG+Ck+G+ Ck++H+
  e_gw1.26.286.1 46 PGQPVCTFYQKTGECKFGPACKYHHP 71
                    5789*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.4E-6431IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.873432IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9630IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.9E-7731IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-5931IPR000571Zinc finger, CCCH-type
SMARTSM003560.00364571IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.5634571IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-104771IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-64870IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-55070IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 72 aa     Download sequence    Send to blast
FPQRPGQPVC DFYQKTGHCR FGELCKYHHP AEFAVRLNPR GLPVRPGQPV CTFYQKTGEC  60
KFGPACKYHH P*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005843962.18e-46hypothetical protein CHLNCDRAFT_27455, partial
SwissprotQ2QT651e-24C3H66_ORYSJ; Zinc finger CCCH domain-containing protein 66
TrEMBLE1ZQW72e-44E1ZQW7_CHLVA; Uncharacterized protein (Fragment)
STRINGXP_005843962.13e-45(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1372922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.17e-26zinc finger nuclease 3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]