PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

e_gw1.27.75.1

Common Name

CHLNCDRAFT_27756

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

Protein Properties

Length: 61aa MW: 6984.21 Da PI: 9.2521

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
e_gw1.27.75.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	55.5	1.1e-17	20	59	3	42
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIk 42 +ei+ e++++y++lp ++A+k+Lg++lT+LKriCR++GI+ e_gw1.27.75.1 20 HEITKEEIEQYYHLPCEEASKQLGIGLTILKRICRRLGIE 59 68*************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	12.184	5	60	IPR003035	RWP-RK domain
Pfam	PF02042	3.9E-16	22	59	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 61 aa Download sequence Send to blast
MSRVPTTLLI RPFPAGRYSH EITKEEIEQY YHLPCEEASK QLGIGLTILK RICRRLGIEK 60 *

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005843797.1	9e-37	expressed protein
TrEMBL	E1ZR94	2e-35	E1ZR94_CHLVA; Expressed protein
STRING	XP_005843797.1	3e-36	(Chlorella variabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP84	16	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	2e-09	RWP-RK domain-containing protein

Link Out ? help Back to Top
Entrez Gene	17351128

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]