PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID e_gw1.3.205.1
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family AP2
Protein Properties Length: 251aa    MW: 28791.6 Da    PI: 10.1959
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
e_gw1.3.205.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2361.7e-1147108155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.....kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    s+ +GV+++k + r++A+I+d   e++     +r k+++lg +  + eAa+a++ a +k++g
  e_gw1.3.205.1  47 SKWRGVTRHKITSRFEAHIWDaNFERKpsssrRRgKQIYLGGWKHELEAARAYDLALLKFFG 108
                    5679*****************88888888885448**********99***********9987 PP
2AP234.55e-11166219356
            AP2   3 ykGVrwdkkrgr...WvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                    ++GV+ +k +++   W+A+I  +     +++++lg++ t+ eAa+ ++ a+ +++ge
  e_gw1.3.205.1 166 FRGVTSHKGKNSkgrWEARIGRVLG---NQYIYLGTYKTELEAARSYDIAAISFRGE 219
                    788876664444444****988422...5**********99*************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-1047110IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.9E-948110IPR001471AP2/ERF domain
PfamPF008473.1E-548106IPR001471AP2/ERF domain
SMARTSM003806.8E-1348135IPR001471AP2/ERF domain
PROSITE profilePS5103214.47348129IPR001471AP2/ERF domain
CDDcd000184.16E-19164228No hitNo description
SuperFamilySSF541714.45E-14164228IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-15165227IPR001471AP2/ERF domain
PROSITE profilePS5103216.542165226IPR001471AP2/ERF domain
SMARTSM003802.1E-25165232IPR001471AP2/ERF domain
PfamPF008475.9E-6166219IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007276Biological Processgamete generation
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MFDFECDWEL VFNEQAEAKL KDLAQHRLKK DRAVALTKPL KSAKSSSKWR GVTRHKITSR  60
FEAHIWDANF ERKPSSSRRR GKQIYLGGWK HELEAARAYD LALLKFFGPQ EPCSGNSPQE  120
ELFHKLNFPE EDYSEEIKTM QEYKCADWVA QIRRRSSGFA RGVSAFRGVT SHKGKNSKGR  180
WEARIGRVLG NQYIYLGTYK TELEAARSYD IAAISFRGEK AVTNFPISNY TEEEIARAKL  240
GAKISEAKKR *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00088SELEXTransfer from AT4G37750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003078132.23e-90DNA-binding domain
TrEMBLA0A090M4P67e-89A0A090M4P6_OSTTA; DNA-binding domain
STRINGA0A090M4P61e-89(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP561657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-57AP2 family protein