PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

e_gw1.3.83.1

Organism

Ostreococcus sp. RCC809

Taxonomic ID

385169

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus

Family

C3H

Protein Properties

Length: 572aa MW: 63681.1 Da PI: 10.6535

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
e_gw1.3.83.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.2	9.4e-06	367	387	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C +++ +G C++G+ C++ H+ e_gw1.3.83.1 367 CLDWLNMGRCRFGEECQYEHD 387 889***************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07047	2.9E-18	5	132	IPR010754	Optic atrophy 3-like
PROSITE profile	PS50103	13.009	361	389	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	8.37E-5	365	388	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.7E-4	367	388	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 572 aa Download sequence Send to blast
MALYIKAFSL VVKTASKPLA KRLKIAISDS PSLRAWAIDA ARAASRLSAF ILRDESAEAA 60 SGAAGRKARQ ETKRALAKAS MSEEAALQAA SEFVGEAFVF AVAGGLVWWE VEKSNAKDEK 120 RRADAAAERA QLCAVIDAQH STMSDMAALI EELMRYREES RAHIAARSRL RSRGVDSRRA 180 PRRAVRTRAR ASSSSTRTMV VGVGKARKNA YIAFLRRAVD EDDAFADALA TCSKDYQSWA 240 KLMRARGRTD DAHDDACRLL DSKGHLLNII DRVCEDVASG ETTREGENAR KVREAWEGTK 300 KVQRAKFAQK GGAEGVAEAR RREREAKERI KAARKERERR ETRDKERKAA RLEYATKVHE 360 ARSAGACLDW LNMGRCRFGE ECQYEHDEMS KGILKDLAVR VGAETGDVKR ERNQAEKAER 420 KARAKALREG KRDSLGEHAS SSDDESESED ESGSEDDMPG FLKIERARRA AEALLATNKP 480 AKKKAGDDAS TKGKPKKTSK QKHFNEKQLE RKQKFLKEGK NQPLVKKGLK KRPAGASVPT 540 KSPKKKKPRH ADSERKKRRV GIERTYYGDE K*

Sequence ? help Back to Top

Protein Sequence Length: 572 aa Download sequence Send to blast

MALYIKAFSL VVKTASKPLA KRLKIAISDS PSLRAWAIDA ARAASRLSAF ILRDESAEAA  60
SGAAGRKARQ ETKRALAKAS MSEEAALQAA SEFVGEAFVF AVAGGLVWWE VEKSNAKDEK  120
RRADAAAERA QLCAVIDAQH STMSDMAALI EELMRYREES RAHIAARSRL RSRGVDSRRA  180
PRRAVRTRAR ASSSSTRTMV VGVGKARKNA YIAFLRRAVD EDDAFADALA TCSKDYQSWA  240
KLMRARGRTD DAHDDACRLL DSKGHLLNII DRVCEDVASG ETTREGENAR KVREAWEGTK  300
KVQRAKFAQK GGAEGVAEAR RREREAKERI KAARKERERR ETRDKERKAA RLEYATKVHE  360
ARSAGACLDW LNMGRCRFGE ECQYEHDEMS KGILKDLAVR VGAETGDVKR ERNQAEKAER  420
KARAKALREG KRDSLGEHAS SSDDESESED ESGSEDDMPG FLKIERARRA AEALLATNKP  480
AKKKAGDDAS TKGKPKKTSK QKHFNEKQLE RKQKFLKEGK NQPLVKKGLK KRPAGASVPT  540
KSPKKKKPRH ADSERKKRRV GIERTYYGDE K*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	333	340	RKERERRE
2	544	556	KKKPRHADSERKK
3	544	558	KKKPRHADSERKKRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022838401.1	1e-155	Zinc finger, CCCH-type
TrEMBL	A0A1Y5I8H1	0.0	A0A1Y5I8H1_OSTTA; Uncharacterized protein
STRING	A0A096P780	1e-155	(Ostreococcus tauri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP4683	3	3