PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

e_gw1.34.51.1

Common Name

CHLNCDRAFT_28394

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

Protein Properties

Length: 117aa MW: 13380.7 Da PI: 10.6491

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
e_gw1.34.51.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	71	2.2e-22	17	77	16	76
HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 16 eyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +r+++C h a +v+++g+eqrfCqqC+ fh +s+f+ ++rsCr+rL kh rrrk e_gw1.34.51.1 17 GCVQRYRICVEHRDAMSVVLKGQEQRFCQQCGTFHPISKFNGSRRSCRDRLRKHAIRRRKC 77 5679*******************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	18.366	1	77	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	7.5E-19	16	64	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	7.46E-19	16	78	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	5.7E-22	17	76	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 117 aa Download sequence Send to blast
MLLLFTPPRL VPTRKRGCVQ RYRICVEHRD AMSVVLKGQE QRFCQQCGTF HPISKFNGSR 60 RSCRDRLRKH AIRRRKCSDG SRPASWHWEE ELAGALGCAV LFPCCTAAWW LPVIPG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	4e-12	21	76	29	84	squamosa promoter binding protein-like 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005843197.1	3e-81	hypothetical protein CHLNCDRAFT_28394
TrEMBL	E1ZST8	6e-80	E1ZST8_CHLVA; Uncharacterized protein
STRING	XP_005843197.1	1e-80	(Chlorella variabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP20	12	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	3e-16	SBP family protein

Link Out ? help Back to Top
Entrez Gene	17350547

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]