PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID e_gw1.4.453.1
Common NameCHLNCDRAFT_20303
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family MYB
Protein Properties Length: 100aa    MW: 11441.1 Da    PI: 10.6229
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
e_gw1.4.453.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.29.3e-14140747
                     HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +Ed+ll +++k++G+++W+ Ia+ +  gR++k+c++rw + 
    e_gw1.4.453.1  1 QEDDLLRQLIKEYGPKNWSIIANGIK-GRSGKSCRLRWCNQ 40
                     69***********************9.***********985 PP
2Myb_DNA-binding506.9e-164791147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +++++++Ed  ++ a++++G+  W++I++ +  gRt++ +k++w++ 
    e_gw1.4.453.1 47 KDPFSQWEDAVIIMAHQKHGNA-WARISKLLV-GRTDNAVKNHWNST 91
                     689*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.54E-25188IPR009057Homeodomain-like
PROSITE profilePS5129424.417145IPR017930Myb domain
CDDcd001676.26E-11139No hitNo description
PfamPF139212.7E-14155No hitNo description
Gene3DG3DSA:1.10.10.606.2E-21148IPR009057Homeodomain-like
SMARTSM007171.6E-7143IPR001005SANT/Myb domain
SMARTSM007171.3E-134694IPR001005SANT/Myb domain
PROSITE profilePS5129418.3234696IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-224995IPR009057Homeodomain-like
CDDcd001671.16E-84992No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
QEDDLLRQLI KEYGPKNWSI IANGIKGRSG KSCRLRWCNQ LNPEVKKDPF SQWEDAVIIM  60
AHQKHGNAWA RISKLLVGRT DNAVKNHWNS TLKRKYQGG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-3619510104MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-3619510104C-Myb DNA-Binding Domain
1msf_C2e-3619510104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in auxin response. Functions in auxin signal transduction and modulates lateral root growth. Interacts with ARF response factors to promote auxin-responsive gene expression (PubMed:17675404). In response to auxin, binds sequence-specific motifs in the promoter of the auxin-responsive gene IAA19, and activates IAA19 transcription. The IAA19 transcription activation by MYB77 is enhanced by direct interaction between MYB77 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:24894996}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00400DAPTransfer from AT3G50060Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin (PubMed:17675404). Down-regulated by potassium deprivation (PubMed:15173595). {ECO:0000269|PubMed:15173595, ECO:0000269|PubMed:17675404}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005850232.11e-68hypothetical protein CHLNCDRAFT_20303, partial
SwissprotQ9SN122e-43MYB77_ARATH; Transcription factor MYB77
TrEMBLE1Z7853e-67E1Z785_CHLVA; Uncharacterized protein (Fragment)
STRINGXP_005850232.14e-68(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.17e-46myb domain protein 77
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]