PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID e_gw1.5.110.1
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family MYB
Protein Properties Length: 654aa    MW: 73291.2 Da    PI: 7.2473
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
e_gw1.5.110.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.28.8e-09369420345
                      SS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT........TTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg.tWktIartmg........kgRtlkqcksrwq 45 
                       WT+eEd++l+++vk+   + +W+ +a+++         + Rt+ qc  r+q
    e_gw1.5.110.1 369 EWTEEEDDKLIELVKENQERlDWSVVAEEIYasnlttdrLVRTPHQCAVRYQ 420
                      6*****************************9999999999999999999998 PP
2Myb_DNA-binding34.25.9e-11429474147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r  WT+eEd  +++  +++G g+W + ar ++ g t+ q+ +rw+ +
    e_gw1.5.110.1 429 RSTWTAEEDAFILKWTREHGAGQWVKLARLLP-GHTGQQLLHRWRRL 474
                      789*****************************.***********976 PP
3Myb_DNA-binding42.71.3e-13481529248
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48 
                      g+WT+eEde l  a+  + +g    W+++a++++  Rt+ qc++rw ++l
    e_gw1.5.110.1 481 GAWTEEEDEALRVAIGAYTSGeriKWSLVAARIP-SRTDVQCRERWKNVL 529
                      79********************************.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0053272363IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-10275291IPR009057Homeodomain-like
PROSITE profilePS500905.877276361IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.0E-10333370IPR009057Homeodomain-like
SuperFamilySSF466898.61E-13341398IPR009057Homeodomain-like
PROSITE profilePS500908.49362420IPR017877Myb-like domain
SMARTSM007173.2E-6366425IPR001005SANT/Myb domain
PfamPF139213.8E-12370437No hitNo description
Gene3DG3DSA:1.10.10.602.9E-12371436IPR009057Homeodomain-like
SuperFamilySSF466891.46E-16410475IPR009057Homeodomain-like
PROSITE profilePS5129415.373424474IPR017930Myb domain
SMARTSM007175.9E-10428477IPR001005SANT/Myb domain
CDDcd001676.45E-9431474No hitNo description
Gene3DG3DSA:1.10.10.603.5E-15437488IPR009057Homeodomain-like
PROSITE profilePS5129420.814475533IPR017930Myb domain
SuperFamilySSF466895.19E-18478580IPR009057Homeodomain-like
SMARTSM007173.1E-14479531IPR001005SANT/Myb domain
CDDcd001674.35E-10482529No hitNo description
PfamPF139212.9E-15483546No hitNo description
Gene3DG3DSA:1.10.10.606.1E-21489536IPR009057Homeodomain-like
PROSITE profilePS500907.41530585IPR017877Myb-like domain
SMARTSM007170.67534587IPR001005SANT/Myb domain
CDDcd001670.00621537584No hitNo description
Gene3DG3DSA:1.10.10.601.9E-9537581IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MARANDESDD EGLAIALGMG VGMKFARGDG GGEDDRRADG VLATMDRLGS GARAKARRDE  60
ALIAEARALG RAEEEEEEED EEEAPRELAL AEAANAQGSR ALQILKMNPE VRNAVAEQMF  120
LPAIHKSLAP KIRTEMKTSL FRPKLPAWAQ TKKEHLEITG SLEEVQRALD ANQKFQLDVR  180
AMLESIDDKL AKNEMTAVAL VAAGINVRIV GTEERTVLSS AVRVDSLAAF EFSERRGRQW  240
SRLQKQITPN ADQLRLGWPN LVDKIPLCYT THCRTWTPKD DEQLQKGVHF QLQKARLVTD  300
QRMSLEELAG VSLQSLSTLL VPGGLDVIAR DAEAIDWSEV VRMHMPVRTV DDCRLRWMNV  360
VDPRISTAEW TEEEDDKLIE LVKENQERLD WSVVAEEIYA SNLTTDRLVR TPHQCAVRYQ  420
AEWNPSLVRS TWTAEEDAFI LKWTREHGAG QWVKLARLLP GHTGQQLLHR WRRLQPTRRV  480
GAWTEEEDEA LRVAIGAYTS GERIKWSLVA ARIPSRTDVQ CRERWKNVLD PKIKFGPWSA  540
EEDAALISAL GPALETTEFN EWSRLTELCP GRTPKNCMRR VRALGRKLKK DAEIAKKRAA  600
LAQKRADDKT NAAKAKAEAA AAAAAAQSAP QAEAPPEPPT KPEPKRRRTR ATR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C6e-203365803159MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-203365803159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022838977.10.0SANT/Myb domain
TrEMBLA0A090N3D60.0A0A090N3D6_OSTTA; SANT/Myb domain
STRINGA0A090N3D60.0(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP42351111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.29e-44myb domain protein 4r1