PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

e_gw1.5.243.1

Organism

Ostreococcus sp. RCC809

Taxonomic ID

385169

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus

Family

C3H

Protein Properties

Length: 461aa MW: 45723.5 Da PI: 8.5826

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
e_gw1.5.243.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.1	2.3e-06	25	43	6	25
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C +++r G C +G++C+F+H e_gw1.5.243.1 25 CFDWSR-GSCARGESCRFSH 43 77899.************ PP
2	zf-CCCH	19.8	1.4e-06	69	88	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C ++a+ GtCk+Gd C+F+H+ e_gw1.5.243.1 69 CFDYAK-GTCKRGDMCRFSHD 88 557999.*************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	5.2E-4	19	45	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.967	19	46	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.3E-4	22	43	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.3E-4	63	89	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.342	68	90	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.6E-4	68	88	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence Send to blast
MRSRSGDSPL ARSGSFSNGE RSDVCFDWSR GSCARGESCR FSHEGAAGAN PQAGGGRVGS 60 PHRAVAGVCF DYAKGTCKRG DMCRFSHDVA AVAAFTKIAS TSGSPSGSPT NGGVGGPRVG 120 TLNIPKPLPL AGALSSAAKP VPKQEPSPSS TPISQRSGAV DYASAAKAGV ATAVEGSFAA 180 ALVGKGAQVE PVLTAPLPPT PMPPTAEKLP ALTASGASVP APRFATKTAT TNGAAPPPPL 240 PPGGKVPPAN VTRPSFQFGT GSSMPLNDQS NGATTNGANG ISFGNKAGAS PKPRYPKPEF 300 AFGTGAVNGH GDGAASAMAK GFVPPVPAGP PPQANQRQPT ATPGFDFAQP GFGIAAPQEK 360 TTQQGNVWGD DSHSNNGSLA AADGSSQLGT EWDVSGMGME SLAADFSNVG NYDTLGSGSF 420 ASGLGYSLFA PTAISQENAA QGQSMWGDAH GSAFGGYAGF *

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence Send to blast

MRSRSGDSPL ARSGSFSNGE RSDVCFDWSR GSCARGESCR FSHEGAAGAN PQAGGGRVGS  60
PHRAVAGVCF DYAKGTCKRG DMCRFSHDVA AVAAFTKIAS TSGSPSGSPT NGGVGGPRVG  120
TLNIPKPLPL AGALSSAAKP VPKQEPSPSS TPISQRSGAV DYASAAKAGV ATAVEGSFAA  180
ALVGKGAQVE PVLTAPLPPT PMPPTAEKLP ALTASGASVP APRFATKTAT TNGAAPPPPL  240
PPGGKVPPAN VTRPSFQFGT GSSMPLNDQS NGATTNGANG ISFGNKAGAS PKPRYPKPEF  300
AFGTGAVNGH GDGAASAMAK GFVPPVPAGP PPQANQRQPT ATPGFDFAQP GFGIAAPQEK  360
TTQQGNVWGD DSHSNNGSLA AADGSSQLGT EWDVSGMGME SLAADFSNVG NYDTLGSGSF  420
ASGLGYSLFA PTAISQENAA QGQSMWGDAH GSAFGGYAGF *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_001417952.1	1e-135	predicted protein
TrEMBL	A4RX82	1e-133	A4RX82_OSTLU; Uncharacterized protein
STRING	ABO96245	1e-134	(Ostreococcus 'lucimarinus')

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP13040	3	3