PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID e_gw1.6.1381.1
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family MYB_related
Protein Properties Length: 252aa    MW: 28493 Da    PI: 9.6624
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
e_gw1.6.1381.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-07180218240
                      SSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqc 40 
                      g W +eE  l+v++ k++G g  W + a++++ gR ++qc
   e_gw1.6.1381.1 180 GDWDEEEIALFVEVAKKYGCGdKWGLFASHIP-GRVGYQC 218
                      68******************************.******* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.64E-8169225IPR009057Homeodomain-like
PROSITE profilePS500907.863174226IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.8E-7175226IPR009057Homeodomain-like
PfamPF002497.1E-6180218IPR001005SANT/Myb domain
CDDcd001672.85E-4182218No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
TYQERVRRNK ELMRTLRVTE AKQAFDESVR ASAKTNPNRS KKTKTKRERD APAPEPTRRS  60
ARVRGESSRA KVEIGEDDKP MGMNDDLQCH LTCDEYCERL GIELGPKMSG GFRGWVEESV  120
RETLGIAASA NEAWERNGGG KSDRRPGKGE AARDHAKRML YKNPNAYFYR HTAGEEQKNG  180
DWDEEEIALF VEVAKKYGCG DKWGLFASHI PGRVGYQCSA AYRHVVIPRG LLRDDAWRMT  240
LSGEAVWVGR R*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001418441.11e-117predicted protein, partial
TrEMBLA4RYS11e-116A4RYS1_OSTLU; Uncharacterized protein (Fragment)
STRINGABO967341e-116(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP463677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.22e-07myb domain protein 3r-5