PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID e_gw1.6.1578.1
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family MYB_related
Protein Properties Length: 192aa    MW: 21752.1 Da    PI: 5.7105
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
e_gw1.6.1578.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.46.7e-13117161347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ l++ + +++G+g+W++I+r +   Rt+ q+ s+ qky
   e_gw1.6.1578.1 117 PWTEDEHRLFLLGLNKFGKGDWRSISRNFVISRTPTQVASHAQKY 161
                      8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.572480IPR001005SANT/Myb domain
PROSITE profilePS500905.7382778IPR017877Myb-like domain
SuperFamilySSF466891.04E-52786IPR009057Homeodomain-like
CDDcd001672.51E-42777No hitNo description
PROSITE profilePS5129416.877110166IPR017930Myb domain
SuperFamilySSF466895.11E-17112167IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-11114160IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-17114164IPR006447Myb domain, plants
SMARTSM007172.0E-11114164IPR001005SANT/Myb domain
CDDcd001679.80E-10117162No hitNo description
PfamPF002492.3E-11117161IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MSTLDFGYGG VDAGFTNLGL LGSDSVSWTW EEDKFFETSI AQYDGSWPIM GDDYWSRLQE  60
KMPQKGVQDL KDRFTRLEDD VRAIESGLVP LPDFEDDSDH SKPAPKTGEQ ERRKGVPWTE  120
DEHRLFLLGL NKFGKGDWRS ISRNFVISRT PTQVASHAQK YFIRLNSMSK KDNNRRSSIH  180
DITSPTPKSS G*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003078210.26e-96Myb domain, plants
SwissprotQ9FNN63e-50SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A1Y5IA741e-94A0A1Y5IA74_OSTTA; Myb family transcription factor
STRINGA0A090LYZ52e-95(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP3221529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.12e-43MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]