PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID e_gw1.7.600.1
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family GATA
Protein Properties Length: 1315aa    MW: 149038 Da    PI: 5.3316
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
e_gw1.7.600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA34.82.2e-11299335135
           GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                    C+nCg +   T+++R gpd+ ++LCnaCGl+y  +g+
  e_gw1.7.600.1 299 CANCGCSRtnTTQMRLGPDKRRSLCNACGLFYVTMGH 335
                    9999986666*********************977775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.7E-6293347IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.95E-7297345No hitNo description
CDDcd002028.68E-9298330No hitNo description
Gene3DG3DSA:3.30.50.105.5E-8298334IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.3E-9299334IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.10.390.102.5E-4676743IPR010919SAND domain-like
SuperFamilySSF473702.35E-21867984IPR001487Bromodomain
SMARTSM002973.1E-21869981IPR001487Bromodomain
Gene3DG3DSA:1.20.920.102.9E-24870978IPR001487Bromodomain
CDDcd043693.09E-23872974No hitNo description
PROSITE profilePS5001416.501890962IPR001487Bromodomain
PfamPF004391.2E-10890966IPR001487Bromodomain
PROSITE patternPS006330895954IPR018359Bromodomain, conserved site
SuperFamilySSF473709.16E-2711491277IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.6E-2711661273IPR001487Bromodomain
SMARTSM002978.4E-2711671277IPR001487Bromodomain
PROSITE profilePS5001417.9511881258IPR001487Bromodomain
PfamPF004392.4E-1511891262IPR001487Bromodomain
PROSITE patternPS00633011931250IPR018359Bromodomain, conserved site
PRINTSPR005032.4E-712051221IPR001487Bromodomain
PRINTSPR005032.4E-712391258IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1315 aa     Download sequence    Send to blast
MAPTEELTEY ERERLAKIER NKALMERLAL AKLASEAGVG NESGSGRGRG RGRGRGRGRG  60
RGRGPREKRA PARTSSRVEK LKKESRLTSW KGTRIERRLR THYFVEVDAD VLCLGTATEE  120
DRNTHGVLVP KNFYSEGYLA DEPYSAWTDD DGWHHMIWGT DHVGEKKRHV RTEEQGCATP  180
SGAAIVFLRE LSRRKMEAYE DFMADRASQA LKMLLSSQPP SWYRPYHPTF INRHSQRLWA  240
PLTVDTKPEF KPLDESGEDK EVAKRRQDFR NAFSMSLSIM NAREGEKLEW IMGDVLEACA  300
NCGCSRTNTT QMRLGPDKRR SLCNACGLFY VTMGHLGNAS SVDHELNTTH EFVDLSIGEE  360
KVVSKEEQKV ETPPSNENER VVVSLETVEE THVRLKLDVT PEESSEPRED KAARNDEHKL  420
IVRYPNVHHT SAANGSAASA LPGKSSSCVT TGTVEDYPID MIDWDALPHY TKLVTLASTG  480
LLANRQIMAD EFPDERLVQR AVPYAAHSHL KRMVETGKYA KYAPNITDSE RYRPQQVSFK  540
PDQIDGLTIF GYAEEKVQES LEGHIERRVE TAAIEEEEIK RETLANIAME DLDAKRTFEY  600
HIEKGISTFE KAAEKAVRDA ERERENARRR KEAEEQEAIR QAELELHGNV RKFGIDLEDV  660
VGYTDEELHA YEGEVEHPQP IEMTCNGHLG VLQTMGRARG ERVHDIDSDT IVGAGEFERM  720
SGSGSSKKWK CSCRVRNADG SVGTNMLTHL VERGDEFGDD VIGRRMAIWW PTEELYYLGF  780
VEGYNSANGE HAIKYDDNQV EDIMLFMQKF KMLDDDVLLP EKDDEDGEDT QTKVHVRPPG  840
VAGGEEATVR VPLGGFSVYA RIKPAVTLKN SERRRCYEIL QAVRKVVDED GRNISEPFEK  900
LPSRFALPEY YDIIKCPVDC ASIERMLRKP SGGYPNVWFF LVAMELMFTN CKRFNDPAAL  960
LYRDADVLRN VYLEAVKERF PGHPVPPSIT VYDNVDEPAW DKPADDGIIE DEEDPFPQKY  1020
VAPTLETLKK KRQSPEGEGE EEVIRQRKSQ RTAPRDRRIP KDPMQCVVYL LSRVRGNAMP  1080
LDALHELMIE KGVKDFETSR RPLAALGALL RQNPAVIQEA RGGELWELVD KVEVDSDEEI  1140
FINGKENTDD ASEGEPSPPP PVKVSMTKKE INACKLVLHA IRSCKDEKGR ELAEPFELLP  1200
TRKQLPDYYR AISAPIDLGS IQRCLNAGGY PSTWMFCVAV ELMLSNCQNY NEPDSQLYED  1260
ADTLRGIVAK TVESEYPGHP LPKRDSVYDA EQCIEPRWKK TPTLKFTMRK NPNQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3iu5_A8e-14116512711107Protein polybromo-1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15262RGRGRGRGRGR
25463RGRGRGRGRG
3621630RERENARRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022839484.10.0Zinc finger, NHR/GATA-type
TrEMBLA0A1Y5ICH60.0A0A1Y5ICH6_OSTTA; Uncharacterized protein
STRINGA0A090M3P60.0(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP636355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.12e-07ZIM-like 1