PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID e_gw1.8.415.1
Common NameCOCSUDRAFT_15840
Organism
Coccomyxa subellipsoidea C-169
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family C3H
Protein Properties Length: 128aa    MW: 14591.7 Da    PI: 9.2184
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
e_gw1.8.415.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.84.5e-0946621026
                   GGTS--TTTTT-SS-SS CS
        zf-CCCH 10 artGtCkyGdrCkFaHg 26
                    +tG C++GdrC++aH 
  e_gw1.8.415.1 46 KKTGSCPRGDRCPYAHN 62
                   79**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.83E-73667IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.2443664IPR000571Zinc finger, CCCH-type
SMARTSM003560.00163663IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-74262IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-84265IPR000571Zinc finger, CCCH-type
SMARTSM00356627295IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
QLQVLPCCKR FVHDWSDCPF SHPGEKARRR DPKVHQYTGI ACPDMKKTGS CPRGDRCPYA  60
HNVFEYWLHP TRYRSQLCND GPKCRRRVCF FAHTIDQLRV PSSKPISSSD APDLQVPATN  120
PPNTRVI*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269|PubMed:16778011}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005647514.16e-91hypothetical protein COCSUDRAFT_15840, partial
SwissprotQ9FU273e-42C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2
TrEMBLI0YX511e-89I0YX51_COCSC; Uncharacterized protein (Fragment)
STRINGXP_005647514.12e-90(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP601532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25900.25e-43C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Mebel AM,Kislov VV,Hayashi M
    Prediction of product branching ratios in the C(3P)+C2H2-->l-C3H+H/c-C3H+H/C3+H2 reaction using ab initio coupled clusters calculations extrapolated to the complete basis set combined with Rice-Ramsperger-Kassel-Marcus and radiationless transition theories.
    J Chem Phys, 2007. 126(20): p. 204310
    [PMID:17552765]
  3. Miyazawa T,Shibata A,Nakagawa K,Tsuzuki T
    Anti-angiogenic function of tocotrienol.
    Asia Pac J Clin Nutr, 2008. 17 Suppl 1: p. 253-6
    [PMID:18296349]
  4. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]