PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID e_gw1.9.373.1
Common NameCOCSUDRAFT_16128
Organism
Coccomyxa subellipsoidea C-169
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family M-type_MADS
Protein Properties Length: 103aa    MW: 11704.7 Da    PI: 10.7458
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
e_gw1.9.373.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.71.7e-241362251
                   ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                   +i +++nrqvtf+kR+ng++KKA ELSvLC+ ++a++if s+ kl+ yss
  e_gw1.9.373.1 13 KIGDERNRQVTFTKRKNGLMKKAMELSVLCGCDIALVIFNSNSKLFQYSS 62
                   7899********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.9E-30463IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.053464IPR002100Transcription factor, MADS-box
CDDcd002654.62E-35574No hitNo description
SuperFamilySSF554559.16E-31581IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-24626IPR002100Transcription factor, MADS-box
PROSITE patternPS003500660IPR002100Transcription factor, MADS-box
PfamPF003191.2E-241360IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-242641IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-244162IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MLAVGRKKIR IEKIGDERNR QVTFTKRKNG LMKKAMELSV LCGCDIALVI FNSNSKLFQY  60
SSTDMDAILQ RYSKMCNQPH EVRNNQDVRL LPRSALPPHA RA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A3e-38588183Myocyte-specific enhancer factor 2A
3kov_B3e-38588183Myocyte-specific enhancer factor 2A
3kov_I3e-38588183Myocyte-specific enhancer factor 2A
3kov_J3e-38588183Myocyte-specific enhancer factor 2A
3p57_A3e-38588183Myocyte-specific enhancer factor 2A
3p57_B3e-38588183Myocyte-specific enhancer factor 2A
3p57_C3e-38588183Myocyte-specific enhancer factor 2A
3p57_D3e-38588183Myocyte-specific enhancer factor 2A
3p57_I3e-38588183Myocyte-specific enhancer factor 2A
3p57_J3e-38588183Myocyte-specific enhancer factor 2A
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005647276.11e-71myocyte enhancer factor 2D
SwissprotA2VDZ35e-35MEF2A_BOVIN; Myocyte-specific enhancer factor 2A
SwissprotQ020785e-35MEF2A_HUMAN; Myocyte-specific enhancer factor 2A
SwissprotQ2MJT05e-35MEF2A_RAT; Myocyte-specific enhancer factor 2A
SwissprotQ609295e-35MEF2A_MOUSE; Myocyte-specific enhancer factor 2A
TrEMBLI0YWG33e-70I0YWG3_COCSC; Myocyte enhancer factor 2D
STRINGXP_005647276.16e-71(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP36561314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.22e-23MIKC_MADS family protein
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]