PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID e_gw1.9.884.1
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family CPP
Protein Properties Length: 520aa    MW: 55744.3 Da    PI: 8.3945
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
e_gw1.9.884.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR49.49.2e-16201238341
            TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                     k+CnCkkskClk+YCeCfaag +C++ C+C++C+N+ e
  e_gw1.9.884.1 201 VKKCNCKKSKCLKLYCECFAAGIFCKD-CSCQQCQNTVE 238
                    79*************************.********987 PP
2TCR54.13.2e-17271310140
            TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                    +++kgCnCkks ClkkYCeCf+ag+kC++ CkCe+CkNk+
  e_gw1.9.884.1 271 RHTKGCNCKKSACLKKYCECFQAGVKCQDYCKCEGCKNKD 310
                    589***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.5E-15199239IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163432.001200311IPR005172CRC domain
PfamPF036381.8E-12202236IPR005172CRC domain
SMARTSM011141.3E-14271312IPR033467Tesmin/TSO1-like CXC domain
PfamPF036389.3E-13274309IPR005172CRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MGGSDGNERE GLTVSDDERA SSERGVEKRS ERGMSAVERL ALSAEASLRR GGAAGAGSGE  60
RATNARRQLN VDFAELDAQA LQDDQYVLQN MYDEFDDSVL GVDTGASRQG SVLPKEDSAT  120
KRSSTTGASV EWTKGFTKTL KNFDADSPRV GTRSARRVSY PSSDTETPVA KSAAKRTSLG  180
KNSASSANTK FAGACKSPVE VKKCNCKKSK CLKLYCECFA AGIFCKDCSC QQCQNTVENS  240
AVVEKTREQI QLRNPSAFAS KILGEDGDQG RHTKGCNCKK SACLKKYCEC FQAGVKCQDY  300
CKCEGCKNKD DGSAPAGPRG DATKAMKTQK TKSRVKNIVD VSNTVPGKAF EEDLVIEDFK  360
LDKFDKVLGS PFRSFEHADD ISTEYSNLTK SAAEQSPLRT LLLSEGVQLS PFFSTSTIPQ  420
SALSPVRAGQ MSPLRPNGFM SPLTPGMRPG PGKYSIRGSA AKAPVPLFSE DSGNSGDFKT  480
PRDHKTNSVF GGMHDPSKDG ALRATFTSPV PMNTPDVHE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-2120231112123Protein lin-54 homolog
5fd3_B4e-2120231112123Protein lin-54 homolog
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001419860.10.0predicted protein
TrEMBLA4S3570.0A4S357_OSTLU; Uncharacterized protein
STRINGABO981530.0(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP3231530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22760.12e-26Tesmin/TSO1-like CXC domain-containing protein