PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_Genemark1.C_10682
Common NameCOCSUDRAFT_64367
Organism
Coccomyxa subellipsoidea C-169
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family DBB
Protein Properties Length: 369aa    MW: 38111.4 Da    PI: 4.7264
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_Genemark1.C_10682genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box223.4e-07345541
                  zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41
                               C+ +e+   +++C+ +   +C+ C  + H g       H++v 
  estExt_Genemark1.C_10682  3 QCDVCENAAGSIYCFADAAVMCQACDRTVH-GanklaakHDRVD 45
                              7******99*********************.5578888888775 PP
2zf-B_box26.99.9e-095394438
                  zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38
                                C+ +++ ++ lfC +++ l+C+ C   +H         H+
  estExt_Genemark1.C_10682 53 AQCDICQDRPAVLFCSEDRALICRRCDIMIHTAneftaqhHR 94
                              68*****************************55667777555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.1E-8146IPR000315B-box-type zinc finger
PROSITE profilePS5011910.424146IPR000315B-box-type zinc finger
CDDcd000212.67E-7246No hitNo description
SMARTSM003361.3E-105097IPR000315B-box-type zinc finger
PROSITE profilePS501199.3285097IPR000315B-box-type zinc finger
PfamPF006437.2E-75391IPR000315B-box-type zinc finger
CDDcd000213.44E-95597No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MVQCDVCENA AGSIYCFADA AVMCQACDRT VHGANKLAAK HDRVDLSKAA ESAQCDICQD  60
RPAVLFCSED RALICRRCDI MIHTANEFTA QHHRYLLQGA TLGLHSLGGD NSDAADKRSG  120
DSKASSASAL TRDALGVSTR SSAGAGPSGM NGSETGLDRR MSSRGTPRSM SSGALVEVPA  180
SASPMGDTWI SGRGIDVNSK AAMTPSQEQE QLRSEAVMAA QQGQAGSIGL MPSFHSGALS  240
DFLSANPSSS GGGSDGNFTL AHELLGLPSM SQAFSAKDID AAYLFQDMGD IDDDLSSLLV  300
PDLDFSSIAS IPAPSVPKLP QTGTPSTLTS GFSDRYGIST SPTSGGDGVV PDGVVPDILA  360
PPLKRQRM*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005652299.10.0hypothetical protein COCSUDRAFT_64367
TrEMBLI0ZAT60.0I0ZAT6_COCSC; Uncharacterized protein
STRINGXP_005652299.10.0(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP582422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.13e-35light-regulated zinc finger protein 1
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]