PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_Genemark1.C_120335
Common NameCOCSUDRAFT_66996
Organism
Coccomyxa subellipsoidea C-169
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family NF-YC
Protein Properties Length: 306aa    MW: 34709.9 Da    PI: 5.5198
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_Genemark1.C_120335genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC166.14.4e-52761821100
                      NF-YC   1 qlksfwekq.......iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkks 77 
                                ql++fw +q         + ++fknh+lPlarikki+k+dedv+misaeaPvl++kace+fileltlrsw+h+eenkrrtl+++
  estExt_Genemark1.C_120335  76 QLRMFWLQQnqeiqqvGTDPAEFKNHQLPLARIKKIMKSDEDVRMISAEAPVLFAKACEMFILELTLRSWNHSEENKRRTLQRN 159
                                79****9987674332223468************************************************************** PP

                      NF-YC  78 diaaavtrtdifdflvdivprde 100
                                diaaa+trtdifdflvdivpr+e
  estExt_Genemark1.C_120335 160 DIAAAITRTDIFDFLVDIVPREE 182
                                *********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471139.56E-3266174IPR009072Histone-fold
PfamPF008081.2E-21102165IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.109.0E-38103180IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0010468Biological Processregulation of gene expression
GO:0048586Biological Processregulation of long-day photoperiodism, flowering
GO:0051247Biological Processpositive regulation of protein metabolic process
GO:2000905Biological Processnegative regulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MTDPNGMGSG LGAEHGQHQQ GGNSGPLAQQ PLQGVLPMHQ GMNFPPVPSG MPSGVPTGMY  60
QPATYMPMPQ QQQNEQLRMF WLQQNQEIQQ VGTDPAEFKN HQLPLARIKK IMKSDEDVRM  120
ISAEAPVLFA KACEMFILEL TLRSWNHSEE NKRRTLQRND IAAAITRTDI FDFLVDIVPR  180
EERCDEGPRP QPMPSMPVSG MGYWQQGQPQ QQQQQQQQQQ QQQPMQSGPG DQHMGLPQRP  240
PGMQMDPAMM QAYYMQQQQV AAAQQQQQHM QQQQQQQHLQ YQQQQQGLPQ NAQAFEHQEN  300
QPNGE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B3e-5382180195NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152158RRTLQRN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005646202.10.0histone-fold-containing protein
TrEMBLI0YTD90.0I0YTD9_COCSC; Histone-fold-containing protein
STRINGXP_005646202.10.0(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP21951616
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.24e-58nuclear factor Y, subunit C4
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]