PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

estExt_Genemark1.C_20115

Common Name

COCSUDRAFT_64454

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

bZIP

Protein Properties

Length: 387aa MW: 41225.1 Da PI: 6.3241

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
estExt_Genemark1.C_20115	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	27.5	6.6e-09	169	220	7	58
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 7 errkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 +r + NR +A+rsR RK++ i Le v++Le+ k++ + l+++ a estExt_Genemark1.C_20115 169 NKRVMANRQSAQRSRMRKLQFISDLEANVQSLENDIKSMNPMHSALRQKHAD 220 5899******************************999888777777766665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	0.0046	166	227	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.9E-7	169	221	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.9E-10	170	224	No hit	No description
CDD	cd14703	5.25E-19	170	219	No hit	No description
PROSITE pattern	PS00036	0	170	185	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.43E-9	170	223	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MQIEARGTGG QGMGNPNMGM GSYADFETAM YRMQPLPLLD NHGPNRHSDN GSGQPDLDDE 60 QLFHIFMDLD MPGVDMPHSA GGAMTNSSDA LPAAGAGQGR PGTASYEGFE SEGEEEGDDE 120 KCSERGGRGR SGGRSTRARR RAGKTKDEAD LSSDDDGDEG GRGGSSGSNK RVMANRQSAQ 180 RSRMRKLQFI SDLEANVQSL ENDIKSMNPM HSALRQKHAD LVSQHDEMRK HAVTLVHKCR 240 QAETVNAALE RECSHMRSLR PELAGRGYGM SRYGYGEGSS SGRYNGLQSA GSAPTRPFDR 300 YGSSGGMQGG ALAAEASAEP CAYVSSAGVL QVSTAPMSGS QPTKQHGSAQ HRPTSAPLQQ 360 MGYGQLYEGG NTYSPMYMHG PESVPY*

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MQIEARGTGG QGMGNPNMGM GSYADFETAM YRMQPLPLLD NHGPNRHSDN GSGQPDLDDE  60
QLFHIFMDLD MPGVDMPHSA GGAMTNSSDA LPAAGAGQGR PGTASYEGFE SEGEEEGDDE  120
KCSERGGRGR SGGRSTRARR RAGKTKDEAD LSSDDDGDEG GRGGSSGSNK RVMANRQSAQ  180
RSRMRKLQFI SDLEANVQSL ENDIKSMNPM HSALRQKHAD LVSQHDEMRK HAVTLVHKCR  240
QAETVNAALE RECSHMRSLR PELAGRGYGM SRYGYGEGSS SGRYNGLQSA GSAPTRPFDR  300
YGSSGGMQGG ALAAEASAEP CAYVSSAGVL QVSTAPMSGS QPTKQHGSAQ HRPTSAPLQQ  360
MGYGQLYEGG NTYSPMYMHG PESVPY*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005650906.1	0.0	hypothetical protein COCSUDRAFT_64454
TrEMBL	I0Z6U3	0.0	I0Z6U3_COCSC; Uncharacterized protein
STRING	XP_005650906.1	0.0	(Coccomyxa subellipsoidea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	3e-11	bZIP family protein

Link Out ? help Back to Top
Entrez Gene	17044372

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]