PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_Genemark1.C_30025
Common NameCOCSUDRAFT_64766
Organism
Coccomyxa subellipsoidea C-169
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family AP2
Protein Properties Length: 404aa    MW: 42157.9 Da    PI: 5.583
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_Genemark1.C_30025genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.68.4e-1086131151
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaark 51 
                               s y+GV+    +++W+A I+       +  ++++g++ tae+Aa+a+++ ++
  estExt_Genemark1.C_30025  86 SLYRGVSKAGDKKKWRAMIQY------NhMQHHVGYYATAEDAARAYDRKAL 131
                               57****************988......44*******************9875 PP
2AP226.41.8e-08171217356
                       AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                               ++GV+  k+ g+W A+Ir       + +  lg f  + eAa+a++aa+ +l ge
  estExt_Genemark1.C_30025 171 FRGVT--KSGGKWKASIRAN-----NVKRDLGVFEDELEAARAYDAAAVQLLGE 217
                               89**7..679*********4.....57779******99**********999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.91E-1186145No hitNo description
SuperFamilySSF541711.18E-1486145IPR016177DNA-binding domain
SMARTSM003806.4E-987149IPR001471AP2/ERF domain
PROSITE profilePS5103213.20887143IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-1387144IPR001471AP2/ERF domain
PROSITE profilePS5103213.419146224IPR001471AP2/ERF domain
SMARTSM003807.1E-12170230IPR001471AP2/ERF domain
SuperFamilySSF541716.02E-12170225IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.6E-13170224IPR001471AP2/ERF domain
SMARTSM003806.0E-9306362IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-12306358IPR016177DNA-binding domain
PROSITE profilePS5103211.285306356IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-11306357IPR001471AP2/ERF domain
CDDcd000182.52E-12306358No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MAEIAEPTNN PPQQPADAAN PNPAAGAADA AEALAALQGA ATAAQHQLGQ FGPPKSAPPN  60
QAPGAPSMSS QIAPGTRIPG MGRGTSLYRG VSKAGDKKKW RAMIQYNHMQ HHVGYYATAE  120
DAARAYDRKA LLFMGPSAIT NFPPSNYAGE DLTADGTAEE QAKKRRRTSA FRGVTKSGGK  180
WKASIRANNV KRDLGVFEDE LEAARAYDAA AVQLLGESAV TNFNVHDIMA TLPQPPAPPP  240
AAAAATAPDQ APHAMHMPIP GGIAQVGAPD SMAGAALGVQ NNPVWQMQTP LAGNGVPQLP  300
VPVPPRFHGV RPAGTGKWHA QVLVDMGRFE TEEEAARAYD RAAVWCLGLT AHTNFPLSDL  360
IQPGDFGAQQ APVQATDLGQ QDEGVPSDSE DDEREASSTA AAAD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005650202.10.0hypothetical protein COCSUDRAFT_64766, partial
TrEMBLI0Z4T90.0I0Z4T9_COCSC; Uncharacterized protein (Fragment)
STRINGXP_005650202.10.0(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP552679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20840.12e-16AP2 family protein
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]