PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_Genemark1.C_30205
Common NameCOCSUDRAFT_64860
Organism
Coccomyxa subellipsoidea C-169
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family GATA
Protein Properties Length: 251aa    MW: 27070 Da    PI: 6.0471
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_Genemark1.C_30205genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA41.12.5e-13205234132
                      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrk 32 
                               C+ Cgtt+TplWR+ +dg++  CnaCGl+ ++
  estExt_Genemark1.C_30205 205 CEDCGTTQTPLWRQYEDGTY--CNACGLRRKR 234
                               ********************..*******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.14E-9198234No hitNo description
Gene3DG3DSA:3.30.50.103.6E-12199234IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011413.89199233IPR000679Zinc finger, GATA-type
SMARTSM004011.0E-8199248IPR000679Zinc finger, GATA-type
CDDcd002025.55E-9204234No hitNo description
PfamPF003203.1E-10205233IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MYSSSELCGN AELLRKIMQH ATDGHSGNGV GETADLTNKE LALGFPDHSA EDKSEDDEIE  60
ALHAGCSHFG LDDGLAFGYM RQYDSDPTAG YFSEPGSTDD LERLRTLGSQ DSAWTVLLPR  120
QRRRKSEKPA RAPEAVGPEW YAEQRLAKRM AASLLPLGSS VPMQLRRPRS KSRADFPAAD  180
RAASAGAALA GAALALDSKG SSRECEDCGT TQTPLWRQYE DGTYCNACGL RRKRADGAYV  240
RSSKASSAMQ *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120125QRRRKS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005650386.10.0hypothetical protein COCSUDRAFT_64860
TrEMBLI0Z5C30.0I0Z5C3_COCSC; Uncharacterized protein
STRINGXP_005650386.10.0(Coccomyxa subellipsoidea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.12e-06GATA family protein
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]