PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_Genemark1.C_40311
Common NameCOCSUDRAFT_65191
Organism
Coccomyxa subellipsoidea C-169
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family NF-X1
Protein Properties Length: 822aa    MW: 87988.3 Da    PI: 7.9283
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_Genemark1.C_40311genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X122.23.1e-07196213119
                  zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                               CG H+C ++CH+G+C++C+
  estExt_Genemark1.C_40311 196 CG-HRCPAICHLGDCKSCS 213
                               **.***************8 PP
2zf-NF-X117.41e-05538551113
                  zf-NF-X1   1 CGkHkCqklCHe.G 13 
                               CG+H+C+++CH+ G
  estExt_Genemark1.C_40311 538 CGNHTCSRPCHLlG 551
                               ***********988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS01359066140IPR019786Zinc finger, PHD-type, conserved site
CDDcd060083.54E-7186231No hitNo description
SMARTSM004380.0051196214IPR000967Zinc finger, NF-X1-type
CDDcd060087.00E-7238278No hitNo description
SMARTSM004389.2248267IPR000967Zinc finger, NF-X1-type
CDDcd060081.14E-9292341No hitNo description
SMARTSM004380.1302322IPR000967Zinc finger, NF-X1-type
SMARTSM004380.051355374IPR000967Zinc finger, NF-X1-type
CDDcd060086.94E-9372420No hitNo description
SMARTSM004380.024382401IPR000967Zinc finger, NF-X1-type
SMARTSM004380.45538567IPR000967Zinc finger, NF-X1-type
SMARTSM004380.41575593IPR000967Zinc finger, NF-X1-type
SMARTSM004380.86620641IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 822 aa     Download sequence    Send to blast
MAPALPGADL ESKPMQAAAE DILRDYTARL GDAAVALEGP GGEVYSVGLS RLREQISSTQ  60
ACADVCLVCL ENIAPDAAVW TCRRSCHVLL HLICAQAWGH QQLQQAAAAA RASAEHPDLS  120
LGPVALQPKA AQHVWGCPKC REEYTAAEAP SEYRCMCSAE LDPVMAACFC GKASAERRCA  180
ASGWSCKKLC GKRLPCGHRC PAICHLGDCK SCSLTGEYAC ACGAVTERRR CEERVFNCGR  240
VCGKTLGCDR CNCDRVCHSG SCGECPRAGV RTCPCGKVAH SNLPCDEAAP PCGATCGKLL  300
SCGRHHCADR CHPGECSSTC RAISEKSCAC GKMQKLVPCA EPFRCERRCT GMRACGRHAC  360
KKRCCDGNHP PCDQVCGRRL RCDNHTDPSP CHAGACLPCP LTASVSCACG RTTYSLPCGS  420
EGGAKEPTCD QACGHVCSSS SCHHPPVPPV RAFQPPPAPT SEGIPSARSH KKVFVDYTPP  480
AQQVALAVRA APAVDSQCPP CTVPVTVHCF GIHSSAQCPC SSAAPFSCSI PCGRPLPCGN  540
HTCSRPCHLL GERQADGLIE GCLPCGLTCQ RHRPCGHACL LECHTSDCPP CEVEARRQPG  600
AELQSLLSCG KPCYRKLPEC PHHCEAICHL SECPASSSCQ KEVTVRCACR RMREKRACSA  660
VRQQLAARHL PADFDASTAV QLLECDAKCH QIKEGKKQKA EQSNAAKAVA SPEKDTPPSP  720
APNSPEALSI DKASKDKPGK KLSREERVRQ REVAALERER AERRRAIQRK LVEYGPVALV  780
LALFLCLILG VTSWMLQPDE LSEERVQEMA AERLRRMGLD L*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005649866.10.0hypothetical protein COCSUDRAFT_65191
TrEMBLI0Z3V30.0I0Z3V3_COCSC; Uncharacterized protein
STRINGXP_005649866.10.0(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP530277
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.11e-115sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]